Related papers: A Problem of Knot
In this paper, we lay the groundwork on the comparison of phylogenetic networks based on edge contractions and expansions as edit operations, as originally proposed by Robinson and Foulds to compare trees. We prove that these operations…
We consider bond percolation on random graphs with given degrees and bounded average degree. In particular, we consider the order of the largest component after the random deletion of the edges of such a random graph. We give a rough…
Given a thin strip of paper, tie a knot, connect the ends, and flatten into the plane. This is a physical model of a folded ribbon knot in the plane, first introduced by Louis Kauffman. We study the folded ribbonlength of these folded…
The organizational development of growing random networks is investigated. These growing networks are built by adding nodes successively and linking each to an earlier node of degree k with attachment probability A_k. When A_k grows slower…
Interactions between several features sometimes play an important role in prediction tasks. But taking all the interactions into consideration will lead to an extremely heavy computational burden. For categorical features, the situation is…
The {\sc Directed Maximum Leaf Out-Branching} problem is to find an out-branching (i.e. a rooted oriented spanning tree) in a given digraph with the maximum number of leaves. In this paper, we improve known parameterized algorithms and…
In the study of ribbon knots, Lamm introduced symmetric unions inspired by earlier work of Kinoshita and Terasaka. We show an identity between the twisted Alexander polynomials of a symmetric union and its partial knot. As a corollary, we…
Computing a minimum-area planar straight-line drawing of a graph is known to be NP-hard for planar graphs, even when restricted to outerplanar graphs. However, the complexity question is open for trees. Only a few hardness results are known…
We introduce an alternative stratification of knots: by the size of lattice on which a knot can be first met. Using this classification, we find ratio of unknots and knots with more than 10 minimal crossings inside different lattices and…
We solve the isomorphism problem for braid groups on trees with $n = 4$ or 5 strands. We do so in three main steps, each of which is interesting in its own right. First, we establish some tools and terminology for dealing with computations…
It is an open question whether there exists a polynomial-time algorithm for computing the rotation distances between pairs of extended ordered binary trees. The problem of computing the rotation distance between an arbitrary pair of trees,…
Rooted phylogenetic networks are often constructed by combining trees, clusters, triplets or characters into a single network that in some well-defined sense simultaneously represents them all. We review these four models and investigate…
A contemporary and fundamental problem faced by many evolutionary biologists is how to puzzle together a collection $\mathcal P$ of partial trees (leaf-labelled trees whose leaves are bijectively labelled by species or, more generally,…
We study the height of a spanning tree $T$ of a graph $G$ obtained by starting with a single vertex of $G$ and repeatedly selecting, uniformly at random, an edge of $G$ with exactly one endpoint in $T$ and adding this edge to $T$.
In this paper, we study the problem of detecting the presence of a planted perfect matching or spanning tree in an Erd\H{o}s--R\'enyi random graph. More precisely, we study the hypothesis testing problem where the statistician observes a…
In this note we examine the following random graph model: for an arbitrary graph $H$, with quadratic many edges, construct a graph $G$ by randomly adding $m$ edges to $H$ and randomly coloring the edges of $G$ with $r$ colors. We show that…
We study the problem of recovering a planted matching in randomly weighted complete bipartite graphs $K_{n,n}$. For some unknown perfect matching $M^*$, the weight of an edge is drawn from one distribution $P$ if $e \in M^*$ and another…
We model the typical behavior of knots and links using grid diagrams. Links are ubiquitous in the sciences, and their "normal" or "typical" behavior is of significant importance in understanding situations such as the topological state of…
We consider a problem introduced by Mossel and Ross [Shotgun assembly of labeled graphs, arXiv:1504.07682]. Suppose a random $n\times n$ jigsaw puzzle is constructed by independently and uniformly choosing the shape of each "jig" from $q$…
Let Gamma be a group generated by two positive multi-twists. We give some sufficient conditions for Gamma to be free or have no `unexpectedly reducible' elements. For a group Gamma generated by two Dehn twists, we classify the elements in…