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Hydrodynamic theories effectively describe many-body systems out of equilibrium in terms of a few macroscopic parameters. However, such hydrodynamic parameters are difficult to derive from microscopics. Seldom is this challenge more…

We develop a novel data-driven framework as an alternative to dynamic flux balance analysis, bypassing the demand for deep domain knowledge and manual efforts to formulate the optimization problem. The proposed framework is end-to-end,…

Machine Learning · Computer Science 2024-10-21 Santanu Rathod , Pietro Lio , Xiao Zhang

Divergent brain connectivity is thought to underlie the behavioral and cognitive symptoms observed in many neurodevelopmental disorders. Quantifying divergence from neurotypical connectivity patterns offers a promising pathway to inform…

Neurons and Cognition · Quantitative Biology 2024-11-19 Rui Sherry Shen , Yusuf Osmanlıoğlu , Drew Parker , Darien Aunapu , Benjamin E. Yerys , Birkan Tunç , Ragini Verma

Neural electromagnetic (EM) signals recorded non-invasively from individual human subjects vary in complexity and magnitude. Nonetheless, variation in neural activity has been difficult to quantify and interpret, due to complex, broad-band…

Neurons and Cognition · Quantitative Biology 2018-07-04 Trang-Anh Nghiem , Jean-Marc Lina , Matteo di Volo , Cristiano Capone , Alan C. Evans , Alain Destexhe , Jennifer S. Goldman

Objective While Alzheimer's disease (AD) and frontotemporal dementia (FTD) show some common memory deficits, these two disorders show partially overlapping complex spatiotemporal patterns of neural dynamics. The objective of this study is…

Neurons and Cognition · Quantitative Biology 2025-07-14 Sungwoo Ahn , Evie A. Malaia , Leonid L Rubchinsky

Predicting future observations plays a central role in machine learning, biology, economics, and many other fields. It lies at the heart of organizational principles such as the variational free energy principle and has even been shown --…

Machine Learning · Computer Science 2025-04-09 Lukas J. Fiderer , Paul C. Barth , Isaac D. Smith , Hans J. Briegel

Here we investigate how local properties of particles in a thermal bath influence the thermodynamics of the bath. We utilize nanothermodynamics, based on two postulates: that small systems can be treated self-consistently by coupling to an…

Statistical Mechanics · Physics 2022-10-26 Ralph V. Chamberlin , Michael R. Clark , Vladimiro Mujica , George H. Wolf

This paper considers joint analysis of multiple functionally related structures in classification tasks. In particular, our method developed is driven by how functionally correlated brain structures vary together between autism and control…

Machine Learning · Statistics 2021-09-08 Zhiyuan Liu , Jörn Schulz , Mohsen Taheri , Martin Styner , James Damon , Stephen Pizer , J. S. Marron

Brain activity is intrinsically a neural dynamic process constrained by anatomical space. This leads to significant variations in spatial distribution patterns and correlation patterns of neural activity across variable and heterogeneous…

Machine Learning · Computer Science 2026-03-10 Hongjie Jiang , Yifei Tang , Shuqiang Wang

Large-scale systems with inherent heterogeneity often exhibit complex dynamics that are crucial for their functional properties. However, understanding how such heterogeneity shapes these dynamics remains a significant challenge,…

Chaotic Dynamics · Physics 2024-12-16 Futa Tomita , Jun-nosuke Teramae

The fundamental, powerful process of computation in the brain has been widely misunderstood. The paper [1] associates the general failure to build intelligent thinking machines with current reductionist principles of temporal coding and…

Neural and Evolutionary Computing · Computer Science 2012-10-09 Dorian Aur

Autism Spectrum Disorder significantly influences the communication abilities, learning processes, behavior, and social interactions of individuals. Although early intervention and customized educational strategies are critical to improving…

Machine Learning · Computer Science 2025-10-10 Nelaka K. A. R , Peiris M. K. , Liyanage R. P. B

One of the challenging problems in the condensed matter physics is to understand the quantum many-body systems, especially, their physical mechanisms behind. Since there are only a few complete analytical solutions of these systems, several…

Statistical Mechanics · Physics 2020-03-27 Jozef Genzor , Tomotoshi Nishino , Andrej Gendiar

At low temperature a thermodynamic system undergoes a phase transition when a physical parameter passes through a singularity point of the free energy, corresponding to formation of a new order. At high temperature the thermal fluctuations…

Statistical Mechanics · Physics 2014-06-17 Bo-Bo Wei , Shao-Wen Chen , Hoi-Chun Po , Ren-Bao Liu

Autism Spectrum Disorder (autism) is a neurodevelopmental delay which affects at least 1 in 44 children. Like many neurological disorder phenotypes, the diagnostic features are observable, can be tracked over time, and can be managed or…

Computers and Society · Computer Science 2023-03-08 Peter Washington , Dennis P. Wall

Topological data analysis (TDA) approaches are becoming increasingly popular for studying the dependence patterns in multivariate time series data. In particular, various dependence patterns in brain networks may be linked to specific tasks…

Methodology · Statistics 2025-12-08 Anass El Yaagoubi Bourakna , Moo K. Chung , Hernando Ombao

We investigate the thermodynamic properties of the Hubbard model on the Bethe lattice with a coordination number of 3 using the thermal canonical tree tensor network method. Our findings reveal two distinct thermodynamic phases: a…

Strongly Correlated Electrons · Physics 2025-12-05 Jia-Lin Chen , Zhen Fan , Bo Zhan , Jiahang Hu , Tong Liu , Junyi Ji , Kang Wang , Hai-Jun Liao , Tao Xiang

We examine phase transitions between the easy, hard, and the unsolvable phases when attempting to identify structure in large complex networks (community detection) in the presence of disorder induced by network noise (spurious links that…

Statistical Mechanics · Physics 2015-06-04 Dandan Hu , Peter Ronhovde , Zohar Nussinov

Deep learning has taken part in the competition since not long ago to learn and identify phase transitions in physical systems such as many body quantum systems, whose underlying lattice structures are generally regular as they're in…

Physics and Society · Physics 2020-01-08 Qi Ni , Jie Kang , Ming Tang , Ying Liu , Yong Zou

Microscopically understanding and classifying phases of matter is at the heart of strongly-correlated quantum physics. With quantum simulations, genuine projective measurements (snapshots) of the many-body state can be taken, which include…

Quantum Gases · Physics 2023-09-20 Henning Schlömer , Annabelle Bohrdt
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