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Speech large language models (SLMs) are typically built from text large language model (TLM) checkpoints, yet they still suffer from a substantial modality gap. Prior work has mainly attempted to reduce this gap from the output side by…

Computation and Language · Computer Science 2026-05-11 Wenqian Cui , Xiao-Hui Li , Daxin Tan , Qiyong Zheng , Irwin King

Large Language Models (LLMs) possess strong representation and reasoning capabilities, but their application to structure-based drug design (SBDD) is limited by insufficient understanding of protein structures and unpredictable molecular…

Machine Learning · Computer Science 2026-01-27 Xuanning Hu , Anchen Li , Qianli Xing , Jinglong Ji , Hao Tuo , Bo Yang

Large language models (LLMs) have achieved remarkable success across a wide range of natural language processing tasks, yet their performance remains heavily biased toward high-resource languages. Tibetan, despite its cultural significance…

Proteins are fundamental to biology, executing diverse functions through complex physicochemical interactions, and they hold transformative potential across medicine, materials science, and environmental applications. Protein Language…

Biomolecules · Quantitative Biology 2025-06-11 Logan Hallee , Nikolaos Rafailidis , David B. Bichara , Jason P. Gleghorn

The combination of Large Language Models (LLMs), systematic evaluation, and evolutionary algorithms has enabled breakthroughs in combinatorial optimization and scientific discovery. We propose to extend this powerful combination to the…

Artificial Intelligence · Computer Science 2026-03-12 Carlo Bosio , Mark W. Mueller

Diffusion models have exhibited substantial success in text-to-image generation. However, they often encounter challenges when dealing with complex and dense prompts involving multiple objects, attribute binding, and long descriptions. In…

Computer Vision and Pattern Recognition · Computer Science 2024-08-28 Mushui Liu , Yuhang Ma , Yang Zhen , Jun Dan , Yunlong Yu , Zeng Zhao , Zhipeng Hu , Bai Liu , Changjie Fan

Large Language Models (LLMs) represent a class of deep learning models adept at understanding natural language and generating coherent responses to various prompts or queries. These models far exceed the complexity of conventional neural…

Machine Learning · Computer Science 2024-12-05 Minghao Shao , Abdul Basit , Ramesh Karri , Muhammad Shafique

Large language models (LLMs) based on decoder-only transformers have demonstrated superior text understanding capabilities compared to CLIP and T5-series models. However, the paradigm for utilizing current advanced LLMs in text-to-image…

Computer Vision and Pattern Recognition · Computer Science 2024-12-06 Bingqi Ma , Zhuofan Zong , Guanglu Song , Hongsheng Li , Yu Liu

Large language models (LLMs) have shown exceptional performance on a variety of natural language tasks. Yet, their capabilities for HTML understanding -- i.e., parsing the raw HTML of a webpage, with applications to automation of web-based…

Amid the swift progress of large language models (LLMs) and their evolution into large multimodal models (LMMs), significant strides have been made in high-resource languages such as English and Chinese. While Arabic LLMs have seen notable…

Computer Vision and Pattern Recognition · Computer Science 2025-02-06 Ahmed Heakl , Sara Ghaboura , Omkar Thawkar , Fahad Shahbaz Khan , Hisham Cholakkal , Rao Muhammad Anwer , Salman Khan

Recent years have witnessed remarkable advances in Large Vision-Language Models (LVLMs), which have achieved human-level performance across various complex vision-language tasks. Following LLaVA's paradigm, mainstream LVLMs typically employ…

Computer Vision and Pattern Recognition · Computer Science 2025-11-11 Jiaqi Liao , Yuwei Niu , Fanqing Meng , Hao Li , Changyao Tian , Yinuo Du , Yuwen Xiong , Dianqi Li , Xizhou Zhu , Li Yuan , Jifeng Dai , Yu Cheng

Designing proteins that satisfy natural language functional requirements is a central goal in protein engineering. A straightforward baseline is to fine-tune generic instruction-tuned LLMs as direct text-to-sequence generators, but this is…

Quantitative Methods · Quantitative Biology 2026-04-21 Yutang Ge , Guojiang Zhao , Sihang Li , Zheng Cheng , Zifeng Zhao , Hanchen Xia , Guolin Ke , Linfeng Zhang , Zhifeng Gao , Yuguang Wang

Large Language Models (LLMs) have been shown to encode clinical knowledge. Many evaluations, however, rely on structured question-answer benchmarks, overlooking critical challenges of interpreting and reasoning about unstructured clinical…

Computation and Language · Computer Science 2026-04-01 Meghal Dani , Muthu Jeyanthi Prakash , Filip Rosa , Zeynep Akata , Stefanie Liebe

Protein language models (PLMs) have shown promise in improving the understanding of protein sequences, contributing to advances in areas such as function prediction and protein engineering. However, training these models from scratch…

Machine Learning · Computer Science 2024-12-19 Shivasankaran Vanaja Pandi , Bharath Ramsundar

We explore how continued pre-training on domain-specific corpora influences large language models, revealing that training on the raw corpora endows the model with domain knowledge, but drastically hurts its prompting ability for question…

Computation and Language · Computer Science 2024-07-26 Daixuan Cheng , Shaohan Huang , Furu Wei

Proteins play a pivotal role in biological systems. The use of machine learning algorithms for protein classification can assist and even guide biological experiments, offering crucial insights for biotechnological applications. We…

Quantitative Methods · Quantitative Biology 2024-10-24 Yizheng Wang , Yixiao Zhai , Yijie Ding , Quan Zou

Assembly code analysis and comprehension play critical roles in applications like reverse engineering, yet they face substantial challenges due to low information density and a lack of explicit syntactic structures. While traditional masked…

Software Engineering · Computer Science 2025-05-23 Xinyi Wang , Jiashui Wang , Jinbo Su , Ke Wang , Peng Chen , Yanming Liu , Long Liu , Xiang Li , Yangdong Wang , Qiyuan Chen , Rongze Chen , Chunfu Jia

Foundation models have revolutionized natural language processing and artificial intelligence, significantly enhancing how machines comprehend and generate human languages. Inspired by the success of these foundation models, researchers…

Large Language Models (LLMs) are the engines driving today's AI agents. The better these models understand human languages, the more natural and user-friendly the interaction with AI becomes, from everyday devices like computers and…

Computation and Language · Computer Science 2025-11-24 Mohamed Mahdi

Language-guided segmentation transcends the scope limitations of traditional semantic segmentation, enabling models to segment arbitrary target regions based on natural language instructions. Existing approaches typically adopt a two-stage…

Computer Vision and Pattern Recognition · Computer Science 2026-05-14 Chao Hao , Jun Xu , Ji Du , Shuo Ye , Ziyue Qiao , Xiaodong Cun , Guangcong Wang , Xubin Zheng , Zitong Yu