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Persistent homology is a powerful tool for characterizing the topology of a data set at various geometric scales. When applied to the description of molecular structures, persistent homology can capture the multiscale geometric features and…

Quantitative Methods · Quantitative Biology 2018-07-31 Zixuan Cang , Guo-Wei Wei

In this paper we develop a novel Topological Data Analysis (TDA) approach for studying graph representations of time series of dynamical systems. Specifically, we show how persistent homology, a tool from TDA, can be used to yield a…

Chaotic Dynamics · Physics 2020-01-28 Audun Myers , Elizabeth Munch , Firas A. Khasawneh

Persistent homology (PH) is one of the most popular methods in Topological Data Analysis. Even though PH has been used in many different types of applications, the reasons behind its success remain elusive; in particular, it is not known…

Algebraic Topology · Mathematics 2023-01-18 Renata Turkeš , Guido Montúfar , Nina Otter

For simple graphs $G$ and $H$, the Hom complex $\mathrm{Hom}(G,H)$ is a polyhedral complex whose vertices are the graph homomorphisms $G\to H$ and whose edges connect the pairs of homomorphisms which differ in a single vertex of $G$. Hom…

Combinatorics · Mathematics 2025-09-08 Soichiro Fujii , Yuni Iwamasa , Kei Kimura , Yuta Nozaki , Akira Suzuki

Persistent homology theory is a relatively new but powerful method in data analysis. Using simplicial complexes, classical persistent homology is able to reveal high dimensional geometric structures of datasets, and represent them as…

Algebraic Topology · Mathematics 2023-12-05 Yaru Gao , Yan Xu , Fengchun Lei

Homology-based invariants can be used to characterize the geometry of datasets and thereby gain some understanding of the processes generating those datasets. In this work we investigate how the geometry of a dataset changes when it is…

Algebraic Topology · Mathematics 2022-03-17 Jens Agerberg , Wojciech Chacholski , Ryan Ramanujam

Persistent homology is a branch of computational algebraic topology that studies shapes and extracts features over multiple scales. In this paper, we present an unsupervised approach that uses persistent homology to study divergent behavior…

Filamentary structures in neutral hydrogen (HI) emission are well aligned with the interstellar magnetic field, so HI emission morphology can be used to construct templates that strongly correlate with measurements of polarized thermal dust…

Astrophysics of Galaxies · Physics 2024-09-04 George Halal , Susan E. Clark , Ari Cukierman , Dominic Beck , Chao-Lin Kuo

Motivated by persistent homology and topological data analysis, we consider formal sums on a metric space with a distinguished subset. These formal sums, which we call persistence diagrams, have a canonical 1-parameter family of metrics…

Algebraic Topology · Mathematics 2025-02-19 Peter Bubenik , Iryna Hartsock

Topological data analysis (TDA) is a rapidly developing collection of methods for studying the shape of point cloud and other data types. One popular approach, designed to be robust to noise and outliers, is to first use a smoothing…

Methodology · Statistics 2017-12-27 Chul Moon , Noah Giansiracusa , Nicole A. Lazar

Given a functor from any category into the category of topological spaces, one obtains a linear representation of the category by post-composing the given functor with a homology functor with field coefficients. This construction is…

Representation Theory · Mathematics 2024-12-02 Riju Bindua , Thomas Brüstle , Luis Scoccola

We study dismantlability in graphs. In order to compare this notion to similar operations in posets (partially ordered sets) or in simplicial complexes, we prove that a graph G dismants on a subgraph H if and only if H is a strong…

Combinatorics · Mathematics 2010-10-12 Etienne Fieux , Jacqueline Lacaze

Our main objective is to demonstrate how homological perturbation theory (HPT) results over the last 40 years immediately or with little extra work give some of the Koszul duality results that have appeared in the last decade. Higher…

Algebraic Topology · Mathematics 2009-07-31 Johannes Huebschmann

The persistence diagram (PD) is an increasingly popular topological descriptor. By encoding the size and prominence of topological features at varying scales, the PD provides important geometric and topological information about a space.…

Persistent homology is a common technique in topological data analysis providing geometrical and topological information about the sample space. All this information, known as topological features, is summarized in persistence diagrams, and…

Methodology · Statistics 2022-04-05 Asael Fabian Martínez

Topological data analysis (TDA) is a rising branch in modern applied mathematics. It extracts topological structures as features of a given space and uses these features to analyze digital data. Persistent homology, one of the central tools…

Algebraic Topology · Mathematics 2025-05-26 Chuan-Shen Hu

Persistent homology (PH) is a rigorous mathematical theory that provides a robust descriptor of data in the form of persistence diagrams (PDs). PDs exhibit, however, complex structure and are difficult to integrate in today's machine…

Machine Learning · Statistics 2019-06-11 Bartosz Zieliński , Michał Lipiński , Mateusz Juda , Matthias Zeppelzauer , Paweł Dłotko

Persistent homology is a widely used tool in Topological Data Analysis that encodes multiscale topological information as a multi-set of points in the plane called a persistence diagram. It is difficult to apply statistical theory directly…

Statistics Theory · Mathematics 2013-12-03 Frédéric Chazal , Brittany Terese Fasy , Fabrizio Lecci , Alessandro Rinaldo , Larry Wasserman

The present work represents a step to deal with stellar structure using a pure geometric approach. A geometric field theory is used to construct a model for a spherically symmetric configuration. The model obtained can be considered as a…

General Relativity and Quantum Cosmology · Physics 2011-09-27 M. I. Wanas , Samah A. Ammar

The configuration space of k points on a manifold carries an action of its diffeomorphism group. The homotopy quotient of this action is equivalent to the classifying space of diffeomorphisms of a punctured manifold, and therefore admits…

Algebraic Topology · Mathematics 2023-01-03 Luciana Basualdo Bonatto