English
Related papers

Related papers: Active learning of digenic functions with boolean …

200 papers

Large Language Models (LLMs) have reshaped our world with significant advancements in science, engineering, and society through applications ranging from scientific discoveries and medical diagnostics to Chatbots. Despite their ubiquity and…

Artificial Intelligence · Computer Science 2025-08-26 Kushal Raj Bhandari , Pin-Yu Chen , Jianxi Gao

We introduce GlassMLP, a machine learning framework using physics-inspired structural input to predict the long-time dynamics in deeply supercooled liquids. We apply this deep neural network to atomistic models in 2D and 3D. Its performance…

Soft Condensed Matter · Physics 2023-09-29 Gerhard Jung , Giulio Biroli , Ludovic Berthier

Molecular Relational Learning (MRL) aims to understand interactions between molecular pairs, playing a critical role in advancing biochemical research. With the recent development of large language models (LLMs), a growing number of studies…

Machine Learning · Computer Science 2025-06-03 Zhuo Chen , Yizhen Zheng , Huan Yee Koh , Hongxin Xiang , Linjiang Chen , Wenjie Du , Yang Wang

Although achieving promising performance, recent analyses show that current generative large language models (LLMs) may still capture dataset biases and utilize them for generation, leading to poor generalizability and harmfulness of LLMs.…

Computation and Language · Computer Science 2024-09-02 Li Du , Zhouhao Sun , Xiao Ding , Yixuan Ma , Yang Zhao , Kaitao Qiu , Ting Liu , Bing Qin

In the biomedical environment, experiments assessing dynamic processes are primarily performed by a human acquisition supervisor. Contemporary implementations of such experiments frequently aim to acquire a maximum number of relevant events…

Computer Vision and Pattern Recognition · Computer Science 2023-10-10 Nils Friederich , Angelo Yamachui Sitcheu , Oliver Neumann , Süheyla Eroğlu-Kayıkçı , Roshan Prizak , Lennart Hilbert , Ralf Mikut

We present MolLingo, a multi-agent system that emulates the reasoning process of a chemist to automate molecular design. Existing LLM-based approaches either operate as standalone generative models without access to external tools or lack…

Artificial Intelligence · Computer Science 2026-05-28 Thao Nguyen , Heng Ji

Multi-step retrieval-augmented generation (RAG) has become a widely adopted strategy for enhancing large language models (LLMs) on tasks that demand global comprehension and intensive reasoning. Although many RAG systems incorporate a…

Computation and Language · Computer Science 2026-05-28 Chulun Zhou , Chunkang Zhang , Guoxin Yu , Fandong Meng , Jie Zhou , Wai Lam , Mo Yu

Robustness to a wide variety of negative factors and the ability to self-repair is an inherent and natural characteristic of all life forms on earth. As opposed to nature, man-made systems are in most cases not inherently robust and a…

Neural and Evolutionary Computing · Computer Science 2016-11-15 Christof Teuscher

Simulations are vital for understanding and predicting the evolution of complex molecular systems. However, despite advances in algorithms and special purpose hardware, accessing the timescales necessary to capture the structural evolution…

Computational Physics · Physics 2021-02-18 Pantelis R. Vlachas , Julija Zavadlav , Matej Praprotnik , Petros Koumoutsakos

This article describes a novel language task, the Blackbird Language Matrices (BLM) task, inspired by intelligence tests, and illustrates the BLM datasets, their construction and benchmarking, and targeted experiments on chunking and…

Computation and Language · Computer Science 2026-02-25 Paola Merlo , Chunyang Jiang , Giuseppe Samo , Vivi Nastase

Recent advances in Multimodal Large Language Models (MLLMs) have achieved remarkable progress in general domains and demonstrated promise in multimodal mathematical reasoning. However, applying MLLMs to geometry problem solving (GPS)…

Computation and Language · Computer Science 2025-04-18 Yicheng Pan , Zhenrong Zhang , Pengfei Hu , Jiefeng Ma , Jun Du , Jianshu Zhang , Quan Liu , Jianqing Gao , Feng Ma

Large Language Models (LLMs) often struggle with dynamically changing knowledge and handling unknown static information. Retrieval-Augmented Generation (RAG) is employed to tackle these challenges and has a significant impact on improving…

Computation and Language · Computer Science 2025-09-18 Zhen Zhang , Xinyu Wang , Yong Jiang , Zile Qiao , Zhuo Chen , Guangyu Li , Feiteng Mu , Mengting Hu , Pengjun Xie , Fei Huang

Embodied intelligence empowers agents with a profound sense of perception, enabling them to respond in a manner closely aligned with real-world situations. Large Language Models (LLMs) delve into language instructions with depth, serving a…

Multimedia · Computer Science 2024-07-17 Shuyuan Liu , Jiawei Chen , Shouwei Ruan , Hang Su , Zhaoxia Yin

Understanding probabilistic dependencies among variables is central to analyzing complex systems. Traditional structure learning methods often require extensive observational data or are limited by manual, error-prone incorporation of…

Machine Learning · Computer Science 2026-02-24 Yinghuan Zhang , Yufei Zhang , Parisa Kordjamshidi , Zijun Cui

Recent research has increasingly focused on reconciling the reasoning capabilities of System 2 with the efficiency of System 1. While existing training-based and prompt-based approaches face significant challenges in terms of efficiency and…

Computation and Language · Computer Science 2025-11-17 Yuxuan Yao , Shuqi Liu , Zehua Liu , Qintong Li , Mingyang Liu , Xiongwei Han , Zhijiang Guo , Han Wu , Linqi Song

The devices designed for the Internet-of-Things encompass a large variety of distinct processor architectures, forming a highly heterogeneous zoo. In order to tackle this, we employ a simulator to estimate the performance of the…

Hardware Architecture · Computer Science 2024-03-13 Cristian Ramírez , Adrián Castelló , Héctor Martínez , Enrique S. Quintana-Ortí

Background: The inception of next generations sequencing technologies have exponentially increased the volume of biological sequence data. Protein sequences, being quoted as the `language of life', has been analyzed for a multitude of…

Quantitative Methods · Quantitative Biology 2020-12-08 Nabil Ibtehaz , S. M. Shakhawat Hossain Sourav , Md. Shamsuzzoha Bayzid , M. Sohel Rahman

With the rapid development of geometric deep learning techniques, many mesh-based convolutional operators have been proposed to bridge irregular mesh structures and popular backbone networks. In this paper, we show that while convolutions…

Computer Vision and Pattern Recognition · Computer Science 2023-12-29 Qiujie Dong , Xiaoran Gong , Rui Xu , Zixiong Wang , Shuangmin Chen , Shiqing Xin , Changhe Tu , Wenping Wang

Simulating student learning behaviors in open-ended problem-solving environments holds potential for education research, from training adaptive tutoring systems to stress-testing pedagogical interventions. However, collecting authentic data…

Artificial Intelligence · Computer Science 2026-05-07 Hanchen David Wang , Clayton Cohn , Zifan Xu , Siyuan Guo , Gautam Biswas , Meiyi Ma