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Cell detection is the task of detecting the approximate positions of cell centroids from microscopy images. Recently, convolutional neural network-based approaches have achieved promising performance. However, these methods require a…

Computer Vision and Pattern Recognition · Computer Science 2021-07-20 Kazuya Nishimura , Hyeonwoo Cho , Ryoma Bise

Locating recombination hotspots in genomic data is an important but difficult task. Current methods frequently rely on estimating complicated models at high computational cost. In this paper we develop an extremely fast, scalable method for…

Applications · Statistics 2015-12-08 Jordan Rodu , Shane T. Jensen

Heterogeneous networks (het-nets) - comprising of conventional macrocell base stations overlaid with femtocells, picocells and wireless relays - offer cellular operators burgeoning traffic demands through cell-splitting gains obtained by…

Information Theory · Computer Science 2011-12-08 Lars Lindbom , Robert Love , Sandeep Krishnamurthy , Chunhai Yao , Nobuhiko Miki , Vikram Chandrasekhar

Anomaly detection aims at identifying deviant samples from the normal data distribution. Contrastive learning has provided a successful way to sample representation that enables effective discrimination on anomalies. However, when…

Computer Vision and Pattern Recognition · Computer Science 2022-07-26 Gaoang Wang , Yibing Zhan , Xinchao Wang , Mingli Song , Klara Nahrstedt

Human-Object Interaction (HOI) detection is a fundamental task in image understanding. While deep-learning-based HOI methods provide high performance in terms of mean Average Precision (mAP), they are computationally expensive and opaque in…

Computer Vision and Pattern Recognition · Computer Science 2025-05-26 Tsung-Shan Yang , Yun-Cheng Wang , Chengwei Wei , Suya You , C. -C. Jay Kuo

Universal, transferable whole-slide image (WSI) representations are central to computational pathology. Incorporating multiple markers (e.g., immunohistochemistry, IHC) alongside H&E enriches H&E-based features with diverse, biologically…

Computer Vision and Pattern Recognition · Computer Science 2025-12-04 Yizhi Zhang , Lei Fan , Zhulin Tao , Donglin Di , Yang Song , Sidong Liu , Cong Cong

Solution-processable interlayers are an important building block for the commercialization of organic electronic devices such as organic solar cells. Here, the potential of cross-linking to provide an insoluble, stable and versatile charge…

The chromatin folding and the spatial arrangement of chromosomes in the cell play a crucial role in DNA replication and genes expression. An improper chromatin folding could lead to malfunctions and, over time, diseases. For eukaryotes,…

Machine Learning · Statistics 2025-11-13 Eloïse Touron , Pedro L. C. Rodrigues , Julyan Arbel , Nelle Varoquaux , Michael Arbel

The Silicon Charge Detector (SCD) is a subdetector of the High Energy Cosmic Radiation Detection payload. The dynamic range of the silicon microstrip detector can be extended by the capacitive coupling effect, which is related to the…

Instrumentation and Detectors · Physics 2024-03-03 Ruo-Si Lu , Rui Qiao , Ke Gong , Wen-Xi Peng , Wei-Shuai Zhang , Dong-Ya Guo , Jia-Ju Wei , Yi-Ming Hu , Jian-Hua Guo , Qi Wu , Peng Hu , Xuan Liu , Bing Lu , Yi-Rong Zhang

Cell detection is an important task in biomedical research. Recently, deep learning methods have made it possible to improve the performance of cell detection. However, a detection network trained with training data under a specific…

Computer Vision and Pattern Recognition · Computer Science 2023-03-10 Hyeonwoo Cho , Kazuya Nishimura , Kazuhide Watanabe , Ryoma Bise

Protein-protein interaction (PPI) prediction plays a pivotal role in deciphering cellular functions and disease mechanisms. To address the limitations of traditional experimental methods and existing computational approaches in cross-modal…

Machine Learning · Computer Science 2025-04-29 Shengrui XU , Tianchi Lu , Zikun Wang , Jixiu Zhai

Localizing targets of interest in a given hyperspectral (HS) image has applications ranging from remote sensing to surveillance. This task of target detection leverages the fact that each material/object possesses its own characteristic…

Computer Vision and Pattern Recognition · Computer Science 2019-03-01 Sirisha Rambhatla , Xingguo Li , Jarvis Haupt

Evolution in its course found a variety of solutions to the same optimisation problem. The advent of high-throughput genomic sequencing has made available extensive data from which, in principle, one can infer the underlying structure on…

Quantitative Methods · Quantitative Biology 2016-04-12 Silvia Grigolon , Silvio Franz , Matteo Marsili

Motivation: Drug discovery demands rapid quantification of compound-protein interaction (CPI). However, there is a lack of methods that can predict compound-protein affinity from sequences alone with high applicability, accuracy, and…

Biomolecules · Quantitative Biology 2020-12-17 Mostafa Karimi , Di Wu , Zhangyang Wang , Yang Shen

A microscopic configuration-interaction (CI) methodology is introduced to enable bottom-up Schroedinger-equation emulation of unconventional superconductivity in ultracold optical traps. We illustrate the method by exploring the properties…

Quantum Gases · Physics 2017-05-24 Benedikt B. Brandt , Constantine Yannouleas , Uzi Landman

High content imaging assays can capture rich phenotypic response data for large sets of compound treatments, aiding in the characterization and discovery of novel drugs. However, extracting representative features from high content images…

Computer Vision and Pattern Recognition · Computer Science 2023-06-13 Johan Fredin Haslum , Christos Matsoukas , Karl-Johan Leuchowius , Erik Müllers , Kevin Smith

Inter pixel capacitance (IPC) is a deterministic electronic coupling resulting in a portion of signal incident on one pixel of a hybridized detector array being measured in adjacent pixels. Data collected by light sensitive HgCdTe arrays…

Instrumentation and Methods for Astrophysics · Physics 2017-04-05 Kevan Donlon , Zoran Ninkov , Stefi Baum , Linpeng Cheng

We use nucleosome maps obtained by high-throughput sequencing to study sequence specificity of intrinsic histone-DNA interactions. In contrast with previous approaches, we employ an analogy between a classical one-dimensional fluid of…

Genomics · Quantitative Biology 2015-05-18 George Locke , Denis Tolkunov , Zarmik Moqtaderi , Kevin Struhl , Alexandre V. Morozov

In computational pathology, we often face a scarcity of annotations and a large amount of unlabeled data. One method for dealing with this is semi-supervised learning which is commonly split into a self-supervised pretext task and a…

Computer Vision and Pattern Recognition · Computer Science 2022-03-15 Manuel Tran , Sophia J. Wagner , Melanie Boxberg , Tingying Peng

Essential protein plays a crucial role in the process of cell life. The identification of essential proteins can not only promote the development of drug target technology, but also contribute to the mechanism of biological evolution. There…

Molecular Networks · Quantitative Biology 2020-05-20 Pengli Lu , JingJuan Yu