Related papers: Length-minimizing LED Trees
In this work, I collect and discuss a series of open questions in one-dimensional geometric optimization in Euclidean spaces. The focus is on two classes of problems: maximal distance minimizers and Steiner trees. Maximal distance…
The Euclidean Steiner tree problem seeks the min-cost network to connect a collection of target locations, and it underlies many applications of wireless networks. In this paper, we present a study on solving the Euclidean Steiner tree…
We consider the problem of embedding the Steiner points of a Steiner tree with given topology into the rectilinear plane. Thereby, the length of the path between a distinguished terminal and each other terminal must not exceed given length…
Given a set of points, we define a minimum Steiner point tree to be a tree interconnecting these points and possibly some additional points such that the length of every edge is at most 1 and the number of additional points is minimized. We…
In this paper, we introduce the Fixed Topology Minimum-Length Tree with Neighborhood Problem, which aims to embed a rooted tree-shaped graph into a $d$-dimensional metric space while minimizing its total length provided that the nodes must…
A phylogenetic tree shows the evolutionary relationships among species. Internal nodes of the tree represent speciation events and leaf nodes correspond to species. A goal of phylogenetics is to combine such trees into larger trees, called…
There are several tools available to infer phylogenetic trees, which depict the evolutionary relationships among biological entities such as viral and bacterial strains in infectious outbreaks, or cancerous cells in tumor progression trees.…
Understanding the evolution of a set of genes or species is a fundamental problem in evolutionary biology. The problem we study here takes as input a set of trees describing {possibly discordant} evolutionary scenarios for a given set of…
The Euclidean Steiner problem is the problem of finding a set $St$, with the shortest length, such that $St \cup A$ is connected, where $A$ is a given set in a Euclidean space. The solutions $St$ to the Steiner problem will be called…
The Euclidean Steiner Minimal Tree problem takes as input a set $\mathcal P$ of points in the Euclidean plane and finds the minimum length network interconnecting all the points of $\mathcal P$. In this paper, in continuation to the works…
The goal of these lectures is to review some mathematical aspects of random tree models used in evolutionary biology to model gene trees or species trees. We start with stochastic models of tree shapes (finite trees without edge lengths),…
An approximate Steiner tree is a Steiner tree on a given set of terminals in Euclidean space such that the angles at the Steiner points are within a specified error e from 120 degrees.This notion arises in numerical approximations of…
This paper proves a conjecture by Solomon about Steiner shallow-light trees (SLT) in Euclidean $d$-space: It is shown that for any finite point set $\mathbb{R}^d$, any root, and any $\epsilon>0$, there is a Euclidean Steiner…
It was recently observed by de Vienne et al. that a simple square root transformation of distances between taxa on a phylogenetic tree allowed for an embedding of the taxa into Euclidean space. While the justification for this was based on…
Let $P$ and $S$ be two disjoint sets of $n$ and $m$ points in the plane, respectively. We consider the problem of computing a Steiner tree whose Steiner vertices belong to $S$, in which each point of $P$ is a leaf, and whose longest edge…
Phylogenetics is now fundamental in life sciences, providing insights into the earliest branches of life and the origins and spread of epidemics. However, finding suitable phylogenies from the vast space of possible trees remains…
We construct a minimum tree for some boundary symmetric tetrahedra R^3, which has two nodes (interior points) with equal weights (positive numbers) having the property that the common perpendicular of some two opposite edges passes through…
The Euclidean Steiner tree problem, normally posed in two dimensions, seeks to connect a set of prescribed terminal nodes by placing additional nodes, known as Steiner points, with edges connecting such nodes either to another Steiner point…
In computational phylogenetics, the problem of constructing a supertree of a given set of rooted input trees can be formalized in different ways, to cope with contradictory information in the input. We consider the Minimum Flip Supertree…
The Steiner tree problem can be stated in terms of finding a connected set of minimal length containing a given set of finitely many points. We show how to formulate it as a mass-minimization problem for $1$-dimensional currents with…