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AlphaFold2 (AF2) has transformed protein structure prediction by harnessing co-evolutionary constraints embedded in multiple sequence alignments (MSAs). MSAs not only encode static structural information, but also hold critical details…
We introduce Quantum Functional Information (QFI), a new metric to quantify the rarity and utility of quantum states and circuits. Unlike standard measures such as fidelity or entropy, QFI captures the balance between functionality and…
Decoding protein-protein interactions (PPIs) at the residue level is crucial for understanding cellular mechanisms and developing targeted therapeutics. We present Seq2Bind Webserver, a computational framework that leverages fine-tuned…
Performing unsupervised domain adaptation on resource-constrained edge devices is challenging. Existing research typically adopts architecture optimization (e.g., designing slimmable networks) but requires expensive training costs.…
We provide a user-friendly, flexible, and lightweight open-source HCI toolkit (github.com/QButterfly) that allows non-tech-savvy researchers to conduct online user interaction studies using the widespread Qualtrics and LimeSurvey platforms.…
In this paper, we propose a novel bidirectional multiscale feature aggregation (BMFA) network with attentional fusion modules for text-independent speaker verification. The feature maps from different stages of the backbone network are…
Recent work synthesizes agentic tasks for post-training tool-using LLMs, yet robust generalization under shifts in tasks and toolsets remains an open challenge. We trace this brittleness to insufficient diversity in synthesized tasks.…
Elastic precision quantization enables multi-bit deployment via a single optimization pass, fitting diverse quantization scenarios.Yet, the high storage and optimization costs associated with the Transformer architecture, research on…
Quantum phase estimation (QPE) is a cornerstone algorithm for extracting Hamiltonian eigenvalues, but its standard, eigenstate-centric form relies on carefully prepared coherent inputs that are costly or impractical for many strongly…
Automated fish documentation processes are in the near future expected to play an essential role in sustainable fisheries management and for addressing challenges of overfishing. In this paper, we present a novel and publicly available…
We present LFM2, a family of Liquid Foundation Models designed for efficient on-device deployment and strong task capabilities. Using hardware-in-the-loop architecture search under edge latency and memory constraints, we obtain a compact…
In this thesis, we introduce new tools for the conformal bootstrap, autoboot and qboot. Each tool solves a different step in the whole computational stack, and combined with an existing efficient tool SDPB which solves semidefinite…
We introduce DiffFit, a differentiable algorithm for fitting protein atomistic structures into an experimental reconstructed Cryo-Electron Microscopy (cryo-EM) volume map. In structural biology, this process is necessary to…
Motivation: RNA thermometers (RNATs) are cis-regulatory ele- ments that change secondary structure upon temperature shift. Often involved in the regulation of heat shock, cold shock and virulence genes, RNATs constitute an interesting…
Software product line represents software engineering methods, tools and techniques for creating a group of related software systems from a shared set of software assets. Each product is a combination of multiple features. These features…
The interpretation of count data originating from the current generation of DNA sequencing platforms requires special attention. In particular, the per-sample library sizes often vary by orders of magnitude from the same sequencing run, and…
Quantum Annealing (QA) can be used to quickly obtain near-optimal solutions for Quadratic Unconstrained Binary Optimization (QUBO) problems. In QA hardware, each decision variable of a QUBO should be mapped to one or more adjacent qubits in…
Many fundamental problems in data mining can be reduced to one or more NP-hard combinatorial optimization problems. Recent advances in novel technologies such as quantum and quantum-inspired hardware promise a substantial speedup for…
Currently, industrial anomaly detection suffers from two bottlenecks: (i) the rarity of real-world defect images and (ii) the opacity of sample quality when synthetic data are used. Existing synthetic strategies (e.g., cut-and-paste)…
Discovering which tables in large, heterogeneous repositories can be joined and by what transformations is a central challenge in data integration and data discovery. Traditional join discovery methods are largely designed for equi-joins,…