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Motivation: Spliced alignment refers to the alignment of messenger RNA (mRNA) or protein sequences to eukaryotic genomes. It plays a critical role in gene annotation and the study of gene functions. Accurate spliced alignment demands…

Genomics · Quantitative Biology 2025-09-23 Siying Yang , Neng Huang , Heng Li

Graph Neural Networks (GNNs) have been widely applied to various fields due to their powerful representations of graph-structured data. Despite the success of GNNs, most existing GNNs are designed to learn node representations on the fixed…

Machine Learning · Computer Science 2021-06-14 Seongjun Yun , Minbyul Jeong , Sungdong Yoo , Seunghun Lee , Sean S. Yi , Raehyun Kim , Jaewoo Kang , Hyunwoo J. Kim

We investigate multi-task learning approaches that use a shared feature representation for all tasks. To better understand the transfer of task information, we study an architecture with a shared module for all tasks and a separate output…

Machine Learning · Computer Science 2020-05-05 Sen Wu , Hongyang R. Zhang , Christopher Ré

We study the properties of alignment, a form of implicit regularization, in linear neural networks under gradient descent. We define alignment for fully connected networks with multidimensional outputs and show that it is a natural…

Machine Learning · Computer Science 2020-06-18 Adityanarayanan Radhakrishnan , Eshaan Nichani , Daniel Bernstein , Caroline Uhler

Deep neural networks achieve state-of-the-art and sometimes super-human performance across various domains. However, when learning tasks sequentially, the networks easily forget the knowledge of previous tasks, known as "catastrophic…

Computer Vision and Pattern Recognition · Computer Science 2021-05-18 Shixiang Tang , Dapeng Chen , Jinguo Zhu , Shijie Yu , Wanli Ouyang

We introduce a data-driven approach to automatic pitch correction of solo singing performances. The proposed approach predicts note-wise pitch shifts from the relationship between the respective spectrograms of the singing and…

Sound · Computer Science 2020-02-25 Sanna Wager , George Tzanetakis , Cheng-i Wang , Minje Kim

The proliferation and ubiquity of temporal data across many disciplines has sparked interest for similarity, classification and clustering methods specifically designed to handle time series data. A core issue when dealing with time series…

Machine Learning · Computer Science 2023-09-26 Iñigo Martinez

Dictionary learning is an effective tool for pattern recognition and classification of time series data. Among various dictionary learning techniques, the dynamic time warping (DTW) is commonly used for dealing with temporal delays,…

Machine Learning · Statistics 2023-07-03 Ruiyu Xu , Chao Wang , Yongxiang Li , Jianguo Wu

Entity alignment is the task of linking entities with the same real-world identity from different knowledge graphs (KGs), which has been recently dominated by embedding-based methods. Such approaches work by learning KG representations so…

Computation and Language · Computer Science 2019-08-23 Yuting Wu , Xiao Liu , Yansong Feng , Zheng Wang , Rui Yan , Dongyan Zhao

Representations are fundamental to artificial intelligence. The performance of a learning system depends on the type of representation used for representing the data. Typically, these representations are hand-engineered using domain…

Machine Learning · Computer Science 2017-04-28 Vivek Veeriah , Shangtong Zhang , Richard S. Sutton

Networks are ubiquitous structure that describes complex relationships between different entities in the real world. As a critical component of prediction task over nodes in networks, learning the feature representation of nodes has become…

Machine Learning · Computer Science 2018-09-10 Hansheng Xue , Jiajie Peng , Xuequn Shang

Neural networks have shown significant potential in solving partial differential equations (PDEs). While deep networks are capable of approximating complex functions, direct one-shot training often faces limitations in both accuracy and…

Numerical Analysis · Mathematics 2025-03-10 Mingxing Weng , Zhiping Mao , Jie Shen

Previous multimodal sentence representation learning methods have achieved impressive performance. However, most approaches focus on aligning images and text at a coarse level, facing two critical challenges:cross-modal misalignment bias…

Computation and Language · Computer Science 2025-07-02 Kang He , Yuzhe Ding , Haining Wang , Fei Li , Chong Teng , Donghong Ji

With the rapid development of fashion market, the customers' demands of customers for fashion recommendation are rising. In this paper, we aim to investigate a practical problem of fashion recommendation by answering the question "which…

Information Retrieval · Computer Science 2019-02-22 Zeyu Cui , Zekun Li , Shu Wu , Xiaoyu Zhang , Liang Wang

Learning low-dimensional topological representation of a network in dynamic environments is attracting much attention due to the time-evolving nature of many real-world networks. The main and common objective of Dynamic Network Embedding…

Social and Information Networks · Computer Science 2021-12-07 Chengbin Hou , Han Zhang , Shan He , Ke Tang

Graph representation learning methods are highly effective in handling complex non-Euclidean data by capturing intricate relationships and features within graph structures. However, traditional methods face challenges when dealing with…

Machine Learning · Computer Science 2025-02-25 Hang Gao , Chenhao Zhang , Fengge Wu , Junsuo Zhao , Changwen Zheng , Huaping Liu

Intent and Slot Identification are two important tasks in Spoken Language Understanding (SLU). For a natural language utterance, there is a high correlation between these two tasks. A lot of work has been done on each of these using…

Computation and Language · Computer Science 2020-03-23 Anmol Bhasin , Bharatram Natarajan , Gaurav Mathur , Himanshu Mangla

Network alignment, the process of finding correspondences between nodes in different graphs, has many scientific and industrial applications. Existing unsupervised network alignment methods find suboptimal alignments that break up node…

Social and Information Networks · Computer Science 2020-08-19 Xiyuan Chen , Mark Heimann , Fatemeh Vahedian , Danai Koutra

In recent years, powered by the learned discriminative representation via graph neural network (GNN) models, deep graph matching methods have made great progresses in the task of matching semantic features. However, these methods usually…

Computer Vision and Pattern Recognition · Computer Science 2021-11-18 He Liu , Tao Wang , Yidong Li , Congyan Lang , Yi Jin , Haibin Ling

Deep learning-based approaches to delineating 3D structure depend on accurate annotations to train the networks. Yet, in practice, people, no matter how conscientious, have trouble precisely delineating in 3D and on a large scale, in part…

Computer Vision and Pattern Recognition · Computer Science 2022-12-27 Doruk Oner , Leonardo Citraro , Mateusz Koziński , Pascal Fua
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