Related papers: Efficient generation of odd order de Bruijn sequen…
A (non-circular) de Bruijn sequence w of order n is a word such that every word of length n appears exactly once in w as a factor. In this paper, we generalize the concept to a multi-shift setting: a multi-shift de Bruijn sequence tau(m,n)…
M. B. Levin used Sobol-Faure low discrepancy sequences with Pascal matrices modulo $2$ to construct, for each integer $b$, a real number $x$ such that the first $N$ terms of the sequence $(b^n x \mod 1)_{n\geq 1}$ have discrepancy $O((\log…
Aligning a sequence to a walk in a labeled graph is a problem of fundamental importance to Computational Biology. For finding a walk in an arbitrary graph with $|E|$ edges that exactly matches a pattern of length $m$, a lower bound based on…
We construct feedback functions of Nonlinear Feedback Shift Registers from those of Linear Feedback Shift Registers using the cross-join pairs method and the Zech logarithms in finite fields. We present a hypothetical algorithm to generate…
The de Bruijn graph $G_K$ of a set of strings $S$ is a key data structure in genome assembly that represents overlaps between all the $K$-length substrings of $S$. Construction and navigation of the graph is a space and time bottleneck in…
We study a class of Linear Feedback Shift Registers (LFSRs) with characteristic polynomial $f(x)=p(x)q(x)$ where $p(x)$ and $q(x)$ are distinct irreducible polynomials in $\F_2[x]$. Important properties of the LFSRs, such as the cycle…
We describe an algorithm that takes as input a complex sequence $(u_n)$ given by a linear recurrence relation with polynomial coefficients along with initial values, and outputs a simple explicit upper bound $(v_n)$ such that $|u_n| \leq…
An attempt to come closer to a resolution of the Collatz conjecture is presented. The central idea is the formation of a tree consisting of positive odd numbers with number 1 as root. Functions for generating the tree from the root are…
Successive pairs of pseudo-random numbers generated by standard linear congruential transformations display ordered patterns of parallel lines. We study the ``ordered'' and ``chaotic'' distribution of such pairs by solving the eigenvalue…
A De Bruijn cycle is a cyclic sequence in which every word of length $n$ over an alphabet $\mathcal{A}$ appears exactly once. De Bruijn tori are a two-dimensional analogue. Motivated by recent progress on universal partial cycles and words,…
We study the distribution of the number of permutations with a given periodic up-down sequence w.r.t. the last entry, find exponential generating functions and prove asymptotic formulas for this distribution.
We introduce a new class of problems lying halfway between questions about graph capacity and intersection. We say that two binary sequences x and y of the same length have a skewincidence if there is a coordinate i for which x_i=y_{i+1}=1…
Aperiodic autocorrelation is an important indicator of performance of sequences used in communications, remote sensing, and scientific instrumentation. Knowing a sequence's autocorrelation function, which reports the autocorrelation at…
Using greedy algorithms to generate de Bruijn sequences is a classical approach that has produced numerous interesting theoretical results. This paper investigates an algorithm which we call the Generalized Prefer-Opposite (GPO). It…
Inverse problems are in many cases solved with optimization techniques. When the underlying model is linear, first-order gradient methods are usually sufficient. With nonlinear models, due to nonconvexity, one must often resort to…
A construction that generates Williamson matrices of order $2n$ from Williamson matrices of odd order $n$ is presented. The construction is completely constructive and only uses three simple sequence operations.
Using the approach suggested in [arXiv:1002.2761] we present below a sufficient condition guaranteeing that two collections of patterns of permutations have the same exponential generating functions for the number of permutations avoiding…
We present a method which displays all palindromes of a given length from De Bruijn words of a certain order, and also a recursive one which constructs all palindromes of length $n+1$ from the set of palindromes of length $n$. We show that…
It is known that, when $n$ is even, the number of permutations of $\{1,2,\dots,n\}$ all of whose cycles have odd length equals the number of those all of whose cycles have even length. Adin, Heged\H{u}s and Roichman recently found a…
We study an interesting family of cooperating coroutines, which is able to generate all patterns of bits that satisfy certain fairly general ordering constraints, changing only one bit at a time. (More precisely, the directed graph of…