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Automated liver segmentation from radiology scans (CT, MRI) can improve surgery and therapy planning and follow-up assessment in addition to conventional use for diagnosis and prognosis. Although convolutional neural networks (CNNs) have…

Image and Video Processing · Electrical Eng. & Systems 2022-05-31 Ugur Demir , Zheyuan Zhang , Bin Wang , Matthew Antalek , Elif Keles , Debesh Jha , Amir Borhani , Daniela Ladner , Ulas Bagci

The microbial community composition in the human gut has a profound effect on human health. This observation has lead to extensive use of microbiome therapies, including over-the-counter ``probiotic" treatments intended to alter the…

Quantitative Methods · Quantitative Biology 2022-10-10 James D. Brunner , Nicholas Chia

A deep understanding of the intricate interactions between particles within a system is a key approach to revealing the essential characteristics of the system, whether it is an in-depth analysis of molecular properties in the field of…

High Energy Physics - Lattice · Physics 2024-12-17 Ru Geng , Yixian Gao , Jian Zu , Hong-Kun Zhang

Missing data imputation poses a paramount challenge when dealing with graph data. Prior works typically are based on feature propagation or graph autoencoders to address this issue. However, these methods usually encounter the…

Machine Learning · Computer Science 2024-04-29 Xindi Zheng , Yuwei Wu , Yu Pan , Wanyu Lin , Lei Ma , Jianjun Zhao

Infectious diseases continue to pose a serious threat to public health, underscoring the urgent need for effective computational approaches to screen novel anti-infective agents. Oligopeptides have emerged as promising candidates in…

Machine Learning · Computer Science 2025-09-25 Dayu Tan , Jing Chen , Xiaoping Zhou , Yansen Su , Chunhou Zheng

Acquisition of data in task-specific applications of machine learning like plant disease recognition is a costly endeavor owing to the requirements of professional human diligence and time constraints. In this paper, we present a simple…

Computer Vision and Pattern Recognition · Computer Science 2019-09-27 Haseeb Nazki , Sook Yoon , Alvaro Fuentes , Dong Sun Park

Predicting the outcome of antiretroviral therapies (ART) for HIV-1 is a pressing clinical challenge, especially when the ART includes drugs with limited effectiveness data. This scarcity of data can arise either due to the introduction of a…

Graph matching is one of the most significant graph analytic tasks, which aims to find the node correspondence across different graphs. Most existing graph matching approaches mainly rely on topological information, whose performances are…

Artificial Intelligence · Computer Science 2024-10-15 Haoran Cheng , Dixin Luo , Hongteng Xu

Multimodal medical image fusion (MMIF) aims to integrate images from different modalities to produce a comprehensive image that enhances medical diagnosis by accurately depicting organ structures, tissue textures, and metabolic information.…

Computer Vision and Pattern Recognition · Computer Science 2025-12-02 Tao Luo , Weihua Xu

Mixture-of-Experts (MoE) architectures achieve scalable learning by routing inputs to specialized subnetworks through conditional computation. However, conventional MoE designs assume homogeneous expert capability and domain-agnostic…

Graph Neural Networks (GNNs) have led to state-of-the-art performance on a variety of machine learning tasks such as recommendation, node classification and link prediction. Graph neural network models generate node embeddings by merging…

Machine Learning · Computer Science 2020-11-04 Yunpeng Weng , Xu Chen , Liang Chen , Wei Liu

Motivation: Molecular interaction networks summarize complex biological processes as graphs, whose structure is informative of biological function at multiple scales. Simultaneously, omics technologies measure the variation or activity of…

Quantitative Methods · Quantitative Biology 2020-12-24 Ramin Hasibi , Tom Michoel

Paired multi-modality medical images, can provide complementary information to help physicians make more reasonable decisions than single modality medical images. But they are difficult to generate due to multiple factors in practice (e.g.,…

Image and Video Processing · Electrical Eng. & Systems 2021-05-20 Junxiao Chen , Jia Wei , Rui Li

Background: The integration of multi-stain histopathology images through deep learning poses a significant challenge in digital histopathology. Current multi-modal approaches struggle with data heterogeneity and missing data. This study…

Computer Vision and Pattern Recognition · Computer Science 2024-09-27 Valentin Koch , Sabine Bauer , Valerio Luppberger , Michael Joner , Heribert Schunkert , Julia A. Schnabel , Moritz von Scheidt , Carsten Marr

We developed a new joint probabilistic segmentation and image distribution matching generative adversarial network (PSIGAN) for unsupervised domain adaptation (UDA) and multi-organ segmentation from magnetic resonance (MRI) images. Our UDA…

Image and Video Processing · Electrical Eng. & Systems 2021-07-20 Jue Jiang , Yu Chi Hu , Neelam Tyagi , Andreas Rimner , Nancy Lee , Joseph O. Deasy , Sean Berry , Harini Veeraraghavan

In medical research, it is common to collect information of multiple continuous biomarkers to improve the accuracy of diagnostic tests. Combining the measurements of these biomarkers into one single score is a popular practice to integrate…

Applications · Statistics 2015-07-08 Tu Xu , Yixin Fang , Alan Rong , Junhui Wang

Deep learning-based image fusion approaches have obtained wide attention in recent years, achieving promising performance in terms of visual perception. However, the fusion module in the current deep learning-based methods suffers from two…

Computer Vision and Pattern Recognition · Computer Science 2022-02-01 Dongyu Rao , Xiao-Jun Wu , Tianyang Xu , Guoyang Chen

Neural networks are powerful function estimators, leading to their status as a paradigm of choice for modeling structured data. However, unlike other structured representations that emphasize the modularity of the problem -- e.g., factor…

Machine Learning · Computer Science 2022-06-20 Tsvetomila Mihaylova , Vlad Niculae , André F. T. Martins

This paper studies the vulnerability of Graph Neural Networks (GNNs) to adversarial attacks on node features and graph structure. Various methods have implemented adversarial training to augment graph data, aiming to bolster the robustness…

Machine Learning · Computer Science 2025-09-03 Jinluan Yang , Ruihao Zhang , Zhengyu Chen , Fei Wu , Kun Kuang

MiRNAs, due to their role in gene regulation, have paved a new pathway for pharmacology, focusing on drug development that targets miRNAs. However, traditional wet lab experiments are limited by efficiency and cost constraints, making it…

Machine Learning · Computer Science 2025-12-08 Ziqi Zhang