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The rapid advancement of medical technology has led to an exponential increase in multi-modal medical data, including imaging, genomics, and electronic health records (EHRs). Graph neural networks (GNNs) have been widely used to represent…

Quantitative Methods · Quantitative Biology 2024-10-03 Favour Nerrise , Alice Louise Heiman , Ehsan Adeli

Unlabeled sensing is a linear inverse problem where the measurements are scrambled under an unknown permutation leading to loss of correspondence between the measurements and the rows of the sensing matrix. Motivated by practical tasks such…

Signal Processing · Electrical Eng. & Systems 2022-05-18 Ahmed Abbasi , Abiy Tasissa , Shuchin Aeron

This paper analyzes the integration of artificial intelligence (AI) with mixed integer linear programming (MILP) to address complex optimization challenges in air transportation with explainability. The study aims to validate the use of…

Accurately predicting the binding affinity between drugs and proteins is an essential step for computational drug discovery. Since graph neural networks (GNNs) have demonstrated remarkable success in various graph-related tasks, GNNs have…

Quantitative Methods · Quantitative Biology 2020-12-18 Jingbo Zhou , Shuangli Li , Liang Huang , Haoyi Xiong , Fan Wang , Tong Xu , Hui Xiong , Dejing Dou

Cross-modal hashing aims to map heterogeneous multimedia data into a common Hamming space, which can realize fast and flexible retrieval across different modalities. Unsupervised cross-modal hashing is more flexible and applicable than…

Computer Vision and Pattern Recognition · Computer Science 2017-12-04 Jian Zhang , Yuxin Peng , Mingkuan Yuan

Anomaly detection is defined as discovering patterns that do not conform to the expected behavior. Previously, anomaly detection was mostly conducted using traditional shallow learning techniques, but with little improvement. As the…

Computer Vision and Pattern Recognition · Computer Science 2022-12-13 Zhiyuan Liu , Chunjie Cao , Jingzhang Sun

The main idea of multimodal recommendation is the rational utilization of the item's multimodal information to improve the recommendation performance. Previous works directly integrate item multimodal features with item ID embeddings,…

Information Retrieval · Computer Science 2023-04-25 Yan Zhou , Jie Guo , Hao Sun , Bin Song , Fei Richard Yu

Multi-scale biomedical knowledge networks are expanding with emerging experimental technologies that generates multi-scale biomedical big data. Link prediction is increasingly used especially in bipartite biomedical networks to identify…

Social and Information Networks · Computer Science 2022-02-25 Jinjiang Guo , Jie Li , Dawei Leng , Lurong Pan

Automated anomaly detection from medical images, such as MRIs and X-rays, can significantly reduce human effort in disease diagnosis. Owing to the complexity of modeling anomalies and the high cost of manual annotation by domain experts…

Image and Video Processing · Electrical Eng. & Systems 2022-09-07 Md Mahfuzur Rahman Siddiquee , Jay Shah , Teresa Wu , Catherine Chong , Todd Schwedt , Baoxin Li

Motivation: Drug combination is a sensible strategy for disease treatment by improving the efficacy and reducing concomitant side effects. Due to the large number of possible combinations among candidate compounds, exhaustive screening is…

Quantitative Methods · Quantitative Biology 2020-02-26 Liang Yu , Mingfei Xia , Lin Gao

Developing interpretable models for neurodevelopmental disorders (NDDs) diagnosis presents significant challenges in effectively encoding, decoding, and integrating multimodal neuroimaging data. While many existing machine learning…

Computer Vision and Pattern Recognition · Computer Science 2026-04-24 Yueyang Li , Lei Chen , Wenhao Dong , Shengyu Gong , Zijian Kang , Boyang Wei , Weiming Zeng , Hongjie Yan , Lingbin Bian , Zhiguo Zhang , Wai Ting Siok , Nizhuan Wang

Intensive Care Units (ICU) require comprehensive patient data integration for enhanced clinical outcome predictions, crucial for assessing patient conditions. Recent deep learning advances have utilized patient time series data, and fusion…

Machine Learning · Computer Science 2023-11-14 Samyak Jain , Manuel Burger , Gunnar Rätsch , Rita Kuznetsova

Biomarker identification is critical for precise disease diagnosis and understanding disease pathogenesis in omics data analysis, like using fold change and regression analysis. Graph neural networks (GNNs) have been the dominant deep…

Gaussian Graphical Models (GGMs) are widely used in high-dimensional data analysis to synthesize the interaction between variables. In many applications, such as genomics or image analysis, graphical models rely on sparsity and clustering…

Machine Learning · Statistics 2026-03-25 Do Edmond Sanou , Christophe Ambroise , Geneviève Robin

Motivated by the need to study the molecular mechanism underlying Type 1 Diabetes (T1D) with the gene expression data collected from both the patients and healthy controls at multiple time points, we propose an innovative method for jointly…

Methodology · Statistics 2018-12-10 Bochao Jia , Faming Liang , the TEDDY Study Group

Attention-based graph neural networks (GNNs), such as graph attention networks (GATs), have become popular neural architectures for processing graph-structured data and learning node embeddings. Despite their empirical success, these models…

Machine Learning · Statistics 2023-06-07 Dexiong Chen , Paolo Pellizzoni , Karsten Borgwardt

Alterations in the human gut bacteriome can be associated with human health issues, such as type-2 diabetes and cardiovascular disease. Both external and internal factors can drive changes in the composition and in the interactions of the…

Molecular Networks · Quantitative Biology 2021-07-19 Samitha Somathilaka , Daniel P. Martins , Wiley Barton , Orla O'Sullivan , Paul D. Cotter , Sasitharan Balasubramaniam

Graph Neural Networks (GNNs) have shown great performance in various tasks, with the core idea of learning from data labels and aggregating messages within the neighborhood of nodes. However, the common challenges in graphs are twofold:…

Machine Learning · Computer Science 2024-11-04 Shenghe Zheng , Hongzhi Wang , Xianglong Liu

It is largely agreed that social network links are formed due to either homophily or social influence. Inspired by this, we aim at understanding the generation of links via providing a novel embedding-based graph formation model. Different…

Social and Information Networks · Computer Science 2024-11-08 Roshni G. Iyer , Yewen Wang , Wei Wang , Yizhou Sun

Graph Neural Networks (GNNs) require a large number of labeled graph samples to obtain good performance on the graph classification task. The performance of GNNs degrades significantly as the number of labeled graph samples decreases. To…

Machine Learning · Computer Science 2023-09-20 Abdullah Alchihabi , Yuhong Guo
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