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An important aspect subtending language understanding and production is the ability to independently encode positional and symbolic information of the words within a sentence. In Transformers, positional information is typically encoded…

Machine Learning · Computer Science 2025-11-18 Felipe Urrutia , Jorge Salas , Alexander Kozachinskiy , Cristian Buc Calderon , Hector Pasten , Cristobal Rojas

Graph machine learning, particularly using graph neural networks, heavily relies on node features. However, many real-world systems, such as social and biological networks, lack node features due to privacy concerns, incomplete data, or…

Machine Learning · Computer Science 2025-06-10 Anwar Said , Waseem Abbas , Xenofon Koutsoukos

Diffusion Transformers (DiTs) have emerged as the dominant architecture for visual generation, powering state-of-the-art image and video models. By representing images as patch tokens with positional encodings (PEs), DiTs combine…

Computer Vision and Pattern Recognition · Computer Science 2025-10-24 Yunpeng Bai , Haoxiang Li , Qixing Huang

We present GRAPE (Group Representational Position Encoding), a unified framework for positional encoding based on group actions. GRAPE unifies two families of mechanisms: (i) multiplicative rotations (Multiplicative GRAPE) in…

Machine Learning · Computer Science 2026-05-15 Yifan Zhang , Zixiang Chen , Yifeng Liu , Zhen Qin , Huizhuo Yuan , Kangping Xu , Yang Yuan , Quanquan Gu , Andrew Chi-Chih Yao

This study reports an unintuitive finding that positional encoding enhances learning of recurrent neural networks (RNNs). Positional encoding is a high-dimensional representation of time indices on input data. Most famously, positional…

Machine Learning · Computer Science 2024-11-28 Takashi Morita

Recent studies have demonstrated the effectiveness of position encoding in transformer architectures. By incorporating positional information, this approach provides essential guidance for modeling dependencies between elements across…

Machine Learning · Computer Science 2025-08-27 Avinash Amballa

Structural and Positional Encodings can significantly improve the performance of Graph Neural Networks in downstream tasks. Recent literature has begun to systematically investigate differences in the structural properties that these…

Machine Learning · Computer Science 2024-03-14 Lukas Fesser , Melanie Weber

Understanding spatial location and relationships is a fundamental capability for modern artificial intelligence systems. Insights from human spatial cognition provide valuable guidance in this domain. Neuroscientific discoveries have…

Neural and Evolutionary Computing · Computer Science 2024-09-17 Boyang Li , Yulin Wu , Nuoxian Huang , Wenjia Zhang

Graphs are often used to organize data because of their simple topological structure, and therefore play a key role in machine learning. And it turns out that the low-dimensional embedded representation obtained by graph representation…

Machine Learning · Computer Science 2021-01-05 Xing Li , Wei Wei , Xiangnan Feng , Zhiming Zheng

A signed directed graph is a graph with sign and direction information on the edges. Even though signed directed graphs are more informative than unsigned or undirected graphs, they are more complicated to analyze and have received less…

Machine Learning · Computer Science 2023-02-17 Taewook Ko , Chong-Kwon Kim

Autoencoders are effective deep learning models that can function as generative models and learn latent representations for downstream tasks. The use of graph autoencoders - with both encoder and decoder implemented as message passing…

Machine Learning · Computer Science 2025-03-04 Magnus Cunow , Gerrit Großmann

Magnetic graphs, originally developed to model quantum systems under magnetic fields, have recently emerged as a powerful framework for analyzing complex directed networks. Existing research has primarily used the spectral properties of the…

Physics and Society · Physics 2025-06-10 Yinan Huang , David F. Gleich , Pan Li

Embedding static graphs in low-dimensional vector spaces plays a key role in network analytics and inference, supporting applications like node classification, link prediction, and graph visualization. However, many real-world networks…

Machine Learning · Computer Science 2021-07-23 Claudio D. T. Barros , Matheus R. F. Mendonça , Alex B. Vieira , Artur Ziviani

To address the peculiarities of directed and/or signed graphs, new Laplacian operators have emerged. For instance, in the case of directionality, we encounter the magnetic operator, dilation (which is underexplored), operators based on…

Social and Information Networks · Computer Science 2024-06-04 Bruno Messias Farias de Resende

Electroencephalography (EEG) is a widely used non-invasive technique for measuring brain activity in brain-computer interface (BCI) applications. Supervised EEG decoding models often struggle to generalize across tasks, subjects, and…

Artificial Intelligence · Computer Science 2026-05-29 Ayse Betul Yuce , Sebastian Stober

Graphs arise naturally in many real-world applications including social networks, recommender systems, ontologies, biology, and computational finance. Traditionally, machine learning models for graphs have been mostly designed for static…

Machine Learning · Computer Science 2020-04-28 Seyed Mehran Kazemi , Rishab Goel , Kshitij Jain , Ivan Kobyzev , Akshay Sethi , Peter Forsyth , Pascal Poupart

Graphs are ubiquitous data structures for representing interactions between entities. With an emphasis on the use of graphs to represent chemical molecules, we explore the task of learning to generate graphs that conform to a distribution…

Machine Learning · Computer Science 2019-03-08 Qi Liu , Miltiadis Allamanis , Marc Brockschmidt , Alexander L. Gaunt

Positional encoding has become a standard component in graph learning, especially for graph Transformers and other models that must distinguish structurally similar nodes, yet its fundamental identifiability remains poorly understood. In…

Information Theory · Computer Science 2026-03-27 Zimo Yan , Zheng Xie , Chang Liu , Yiqin Lv , Runfan Duan

How can we best encode structured data into sequential form for use in large language models (LLMs)? In this work, we introduce a parameter-efficient method to explicitly represent structured data for LLMs. Our method, GraphToken, learns an…

Machine Learning · Computer Science 2024-02-09 Bryan Perozzi , Bahare Fatemi , Dustin Zelle , Anton Tsitsulin , Mehran Kazemi , Rami Al-Rfou , Jonathan Halcrow

Knowledge graph embedding, which projects symbolic entities and relations into continuous vector spaces, is gaining increasing attention. Previous methods allow a single static embedding for each entity or relation, ignoring their intrinsic…

Artificial Intelligence · Computer Science 2020-04-07 Quan Wang , Pingping Huang , Haifeng Wang , Songtai Dai , Wenbin Jiang , Jing Liu , Yajuan Lyu , Yong Zhu , Hua Wu