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The development of unsupervised hashing is advanced by the recent popular contrastive learning paradigm. However, previous contrastive learning-based works have been hampered by (1) insufficient data similarity mining based on global-only…

Computer Vision and Pattern Recognition · Computer Science 2022-09-29 Jiaguo Yu , Huming Qiu , Dubing Chen , Haofeng Zhang

Structure-based virtual screening (SBVS) is a key workflow in computational drug discovery. SBVS models are assessed by measuring the enrichment of known active molecules over decoys in retrospective screens. However, the standard formula…

Quantitative Methods · Quantitative Biology 2024-03-18 Michael Brocidiacono , Konstantin I. Popov , Alexander Tropsha

Models for Visual Question Answering (VQA) often rely on the spurious correlations, i.e., the language priors, that appear in the biased samples of training set, which make them brittle against the out-of-distribution (OOD) test data.…

Computer Vision and Pattern Recognition · Computer Science 2022-10-11 Qingyi Si , Yuanxin Liu , Fandong Meng , Zheng Lin , Peng Fu , Yanan Cao , Weiping Wang , Jie Zhou

Hashing methods have been widely used for applications of large-scale image retrieval and classification. Non-deep hashing methods using handcrafted features have been significantly outperformed by deep hashing methods due to their better…

Computer Vision and Pattern Recognition · Computer Science 2017-07-10 Jingkuan Song , Tao He , Hangbo Fan , Lianli Gao

Deep learning-based drug response prediction (DRP) methods can accelerate the drug discovery process and reduce R\&D costs. Although the mainstream methods achieve high accuracy in predicting response regression values, the regression-aware…

Biomolecules · Quantitative Biology 2023-12-19 Kun Li , Wenbin Hu

The knowledge of potentially druggable binding sites on proteins is an important preliminary step towards the discovery of novel drugs. The computational prediction of such areas can be boosted by following the recent major advances in the…

Biomolecules · Quantitative Biology 2021-02-17 Stelios K. Mylonas , Apostolos Axenopoulos , Petros Daras

With the rapid growth of textual content on the Internet, efficient large-scale semantic text retrieval has garnered increasing attention from both academia and industry. Text hashing, which projects original texts into compact binary hash…

Information Retrieval · Computer Science 2025-11-03 Liyang He , Zhenya Huang , Cheng Yang , Rui Li , Zheng Zhang , Kai Zhang , Zhi Li , Qi Liu , Enhong Chen

Many unsupervised hashing methods are implicitly established on the idea of reconstructing the input data, which basically encourages the hashing codes to retain as much information of original data as possible. However, this requirement…

Computer Vision and Pattern Recognition · Computer Science 2021-05-20 Zexuan Qiu , Qinliang Su , Zijing Ou , Jianxing Yu , Changyou Chen

Compressing videos into binary codes can improve retrieval speed and reduce storage overhead. However, learning accurate hash codes for video retrieval can be challenging due to high local redundancy and complex global dependencies between…

Computer Vision and Pattern Recognition · Computer Science 2023-11-06 Rukai Wei , Yu Liu , Jingkuan Song , Heng Cui , Yanzhao Xie , Ke Zhou

Binary vector embeddings enable fast nearest neighbor retrieval in large databases of high-dimensional objects, and play an important role in many practical applications, such as image and video retrieval. We study the problem of learning…

Computer Vision and Pattern Recognition · Computer Science 2018-06-26 Fatih Cakir , Kun He , Sarah Adel Bargal , Stan Sclaroff

Deep hashing has shown promising results in image retrieval and recognition. Despite its success, most existing deep hashing approaches are rather similar: either multi-layer perceptron or CNN is applied to extract image feature, followed…

Computer Vision and Pattern Recognition · Computer Science 2020-08-11 Zhenzhen Wang , Weixiang Hong , Junsong Yuan

Drug development is a wide scientific field that faces many challenges these days. Among them are extremely high development costs, long development times, as well as a low number of new drugs that are approved each year. To solve these…

Biomolecules · Quantitative Biology 2022-11-08 Christoph Gorgulla

Due to the superiority in similarity computation and database storage for large-scale multiple modalities data, cross-modal hashing methods have attracted extensive attention in similarity retrieval across the heterogeneous modalities.…

Information Retrieval · Computer Science 2020-01-15 Lu Wang , Jie Yang

Multi-view graph data, which both captures node attributes and rich relational information from diverse sources, is becoming increasingly prevalent in various domains. The effective and efficient retrieval of such data is an important task.…

Information Retrieval · Computer Science 2025-08-19 Yang Xu , Zuliang Yang , Kai Ming Ting

Recent years have seen more and more demand for a unified framework to address multiple realistic image retrieval tasks concerning both category and attributes. Considering the scale of modern datasets, hashing is favorable for its low…

Computer Vision and Pattern Recognition · Computer Science 2016-07-20 Haomiao Liu , Ruiping Wang , Shiguang Shan , Xilin Chen

We propose an incremental strategy for learning hash functions with kernels for large-scale image search. Our method is based on a two-stage classification framework that treats binary codes as intermediate variables between the feature…

Computer Vision and Pattern Recognition · Computer Science 2016-06-10 Bahadir Ozdemir , Mahyar Najibi , Larry S. Davis

The first step in drug discovery is finding drug molecule moieties with medicinal activity against specific targets. Therefore, it is crucial to investigate the interaction between drug-target proteins and small chemical molecules. However,…

Biomolecules · Quantitative Biology 2022-11-15 Boyuan Liu

Instance Search (INS) is a fundamental problem for many applications, while it is more challenging comparing to traditional image search since the relevancy is defined at the instance level. Existing works have demonstrated the success of…

Computer Vision and Pattern Recognition · Computer Science 2017-01-30 Jingkuan Song , Tao He , Lianli Gao , Xing Xu , Heng Tao Shen

Large-scale cross-modal hashing similarity retrieval has attracted more and more attention in modern search applications such as search engines and autopilot, showing great superiority in computation and storage. However, current…

Computer Vision and Pattern Recognition · Computer Science 2020-01-01 Lu Wang , Jie Yang

Despite decades of advancements in automated ligand screening, large-scale drug discovery remains resource-intensive and requires post-processing hit selection, a step where chemists manually select a few promising molecules based on their…

Machine Learning · Computer Science 2025-03-24 Tai Dang , Long-Hung Pham , Sang T. Truong , Ari Glenn , Wendy Nguyen , Edward A. Pham , Jeffrey S. Glenn , Sanmi Koyejo , Thang Luong