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The theory of interaction-based evolution argues that, at the most basic level of analysis, there is a third alternative for how adaptive evolution works besides a) accidental mutation and natural selection and b) Lamarckism, namely, c)…

Populations and Evolution · Quantitative Biology 2016-05-25 Adi Livnat

Generalization across domains requires stable structure that links the source and target distributions. Building on causal transportability theory, we study a sequential prediction setting in which the target predictor can be represented as…

Machine Learning · Computer Science 2026-05-28 Kasra Jalaldoust , Elias Bareinboim

Neural population activity often exhibits rich variability and temporal structure. This variability is thought to arise from single-neuron stochasticity, neural dynamics on short time-scales, as well as from modulations of neural firing…

Machine Learning · Statistics 2014-10-14 Mijung Park , Jakob H. Macke

Experimental characterization of neuronal dynamics involves recording both of spontaneous activity patterns and of responses to transient and sustained inputs. While much theoretical attention has been devoted to the spontaneous activity of…

Neurons and Cognition · Quantitative Biology 2020-07-24 Jonathan Rubin , Justyna Signerska-Rynkowska , Jonathan D. Touboul

A recent experiment suggests that neural circuits may alternatively implement continuous or discrete attractors, depending on the training set up. In recurrent neural network models, continuous and discrete attractors are separately modeled…

Biological Physics · Physics 2007-09-04 Alberto Bernacchia

We consider dynamical systems arising from substitutions over a finite alphabet. We prove that such a system is linearly repetitive if and only if it is minimal. Based on this characterization we extend various results from primitive…

Dynamical Systems · Mathematics 2015-02-24 D. Damanik , D. Lenz

Social learning is widely observed in many species. Less experienced agents copy successful behaviors, exhibited by more experienced individuals. Nevertheless, the dynamical mechanisms behind this process remain largely unknown. Here we…

Dynamical Systems · Mathematics 2024-02-08 Carlos Calvo Tapia , Ivan Y. Tyukin , Valeriy A. Makarov Slizneva

The study of synchronization in biological systems is essential for the understanding of the rhythmic phenomena of living organisms at both molecular and cellular levels. In this paper, by using simple dynamical systems theory, we present a…

Molecular Networks · Quantitative Biology 2007-05-23 Chunguang Li , Luonan Chen , Kazuyuki Aihara

Learning governing dynamics from data is a common goal across the sciences, yet it is only well-posed when the underlying mechanisms are identifiable. In practice, many data-driven methods implicitly assume identifiability; when this…

Machine Learning · Computer Science 2026-05-13 Aybüke Ulusarslan , Niki Kilbertus , Nora Schneider

In the paper the memory effect in the system consisting from a trajectory of process and an environment is considered. The environment is presented by scalar potential and noise. The evolution of system is interpreted as process of the…

General Physics · Physics 2008-01-28 Maxim Budaev

The chapter presents some new approaches to describing the collective behavior of complex systems of mathematical biology based on the evolution equations of observables such as open systems. This representation of kinetic evolution has…

Mathematical Physics · Physics 2025-03-18 V. I. Gerasimenko

Stability is a basic requirement when studying the behavior of dynamical systems. However, stabilizing dynamical systems via reinforcement learning is challenging because only little data can be collected over short time horizons before…

Optimization and Control · Mathematics 2024-11-01 Steffen W. R. Werner , Benjamin Peherstorfer

Deep learning systems achieve remarkable empirical performance, yet the stability of the training process itself remains poorly understood. Training unfolds as a high-dimensional dynamical system in which small perturbations to…

Machine Learning · Computer Science 2026-01-21 Zhipeng Zhang , Zhenjie Yao , Kai Li , Lei Yang

We show that a neural network originally designed for language processing can learn the dynamical rules of a stochastic system by observation of a single dynamical trajectory of the system, and can accurately predict its emergent behavior…

Statistical Mechanics · Physics 2022-02-18 Corneel Casert , Isaac Tamblyn , Stephen Whitelam

Learning is a physical process. Here, we aim to study a simple dynamical system composed of springs and sticks capable of arbitrarily approximating any continuous function. The main idea of our work is to use the sticks to mimic a…

Machine Learning · Computer Science 2025-08-27 Luis Mantilla Calderón , Alán Aspuru-Guzik

All biological systems are subject to perturbations: due to thermal fluctuations, external environments, or mutations. Yet, while biological systems are composed of thousands of interacting components, recent high-throughput experiments…

Quantitative Methods · Quantitative Biology 2024-12-19 Christopher Joel Russo , Kabir Husain , Arvind Murugan

Understanding of the onset and generic mechanisms of transitions between distinct patterns of activity in realistic models of individual neurons and neural networks presents a fundamental challenge for the theory of applied dynamical…

Neurons and Cognition · Quantitative Biology 2020-07-14 Marina L. Kolomiets , Andrey L. Shilnikov

This paper presents the foundation for a decomposition theory for Boolean networks, a type of discrete dynamical system that has found a wide range of applications in the life sciences, engineering, and physics. Given a Boolean network…

Dynamical Systems · Mathematics 2022-06-10 Claus Kadelka , Reinhard Laubenbacher , David Murrugarra , Alan Veliz-Cuba , Matthew Wheeler

Imitation learning is an effective approach for autonomous systems to acquire control policies when an explicit reward function is unavailable, using supervision provided as demonstrations from an expert, typically a human operator.…

Machine Learning · Computer Science 2018-06-20 YuXuan Liu , Abhishek Gupta , Pieter Abbeel , Sergey Levine

We study an excitable active rotator with slowly adapting nonlinear feedback and noise. Depending on the adaptation and the noise level, this system may display noise-induced spiking, noise-perturbed oscillations, or stochastic busting. We…

Adaptation and Self-Organizing Systems · Physics 2020-08-26 Igor Franović , Serhiy Yanchuk , Sebastian Eydam , Iva Bačić , Matthias Wolfrum