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Dynamical systems are used to model a variety of phenomena in which the bifurcation structure is a fundamental characteristic. Here we propose a statistical machine-learning approach to derive lowdimensional models that automatically…

Quantitative Methods · Quantitative Biology 2015-06-11 Yohei Kondo , Kunihiko Kaneko , Shuji Ishihara

The brain modifies its synaptic strengths during learning in order to better adapt to its environment. However, the underlying plasticity rules that govern learning are unknown. Many proposals have been suggested, including Hebbian…

Neurons and Cognition · Quantitative Biology 2020-12-09 Aran Nayebi , Sanjana Srivastava , Surya Ganguli , Daniel L. K. Yamins

Based on the heuristics that maintaining presumptions can be beneficial in uncertain environments, we propose a set of basic axioms for learning systems to incorporate the concept of prejudice. The simplest, memoryless model of a…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Andreas U. Schmidt

Different subsystems of organisms adapt over many time scales, such as rapid changes in the nervous system (learning), slower morphological and neurological change over the lifetime of the organism (postnatal development), and change over…

Neural and Evolutionary Computing · Computer Science 2017-07-28 Sam Kriegman , Nick Cheney , Francesco Corucci , Josh C. Bongard

Lateral inhibition models coupled with Hebbian plasticity have been shown to learn factorised causal representations of input stimuli, for instance, oriented edges are learned from natural images. Currently, these models require the…

Neurons and Cognition · Quantitative Biology 2025-01-07 Henrique Reis Aguiar , Matthias H. Hennig

Multistability-induced hysteresis has been widely studied in mechanical systems, but such behavior has proven more difficult to reproduce experimentally in flow networks. Natural flow networks like animal and plant vasculature can exhibit…

Soft Condensed Matter · Physics 2025-12-03 Lauren E. Altman , Nadia Aguilar , Douglas J. Durian , Miguel Ruiz-Garcia , Eleni Katifori

Despite the striking successes of deep neural networks trained with gradient-based optimization, these methods differ fundamentally from their biological counterparts. This gap raises key questions about how nature achieves robust,…

Machine Learning · Computer Science 2025-10-15 Mattia Scardecchia

Understanding the binding dynamics of liquid molecules is of fundamental importance in physical and life sciences. However, nanoscale fast dynamics pose great challenges for experimental characterization. Conventionally, the binding…

Chemical Physics · Physics 2024-10-28 Shiyi Qin , Zhi Yang , Huimin Liu , Xiaoli Wang , Shangguo Hou , Kai Huang

We associate learning and adaptation in living systems with the shaping of the velocity vector field in the respective dynamical systems in response to external, generally random, stimuli. With this, a mathematical concept of self-shaping…

Adaptation and Self-Organizing Systems · Physics 2015-10-08 Natalia B. Janson , Christopher J. Marsden

Biological evolution of a population is governed by the fitness landscape, which is a map from genotype to fitness. However, a fitness landscape depends on the organisms environment, and evolution in changing environments is still poorly…

Populations and Evolution · Quantitative Biology 2022-09-26 Suman G Das , Joachim Krug , Muhittin Mungan

Networked dynamical systems are common throughout science in engineering; e.g., biological networks, reaction networks, power systems, and the like. For many such systems, nonlinearity drives populations of identical (or near-identical)…

Dynamical Systems · Mathematics 2023-02-10 James Koch , Zhao Chen , Aaron Tuor , Jan Drgona , Draguna Vrabie

Bifurcations mark qualitative changes of long-term behavior in dynamical systems and can often signal sudden ("hard") transitions or catastrophic events (divergences). Accurately locating them is critical not just for deeper understanding…

Machine Learning · Computer Science 2024-06-18 Yorgos M. Psarellis , Themistoklis P. Sapsis , Ioannis G. Kevrekidis

Many human knowledge systems, such as science, law, and invention, are built on documents and the citations that link them. Citations, while serving multiple purposes, primarily function as a way to explicitly document the use of prior work…

Physics and Society · Physics 2025-01-29 Sadamori Kojaku , Robert Mahari , Sandro Claudio Lera , Esteban Moro , Alex Pentland , Yong-Yeol Ahn

Unlike computation or the numerical analysis of differential equations, simulation does not have a well established conceptual and mathematical foundation. Simulation is an arguable unique union of modeling and computation. However,…

adap-org · Physics 2008-02-03 Steen Rasmussen , Christopher Barrett

The characterization of the "most connected" nodes in static or slowly evolving complex networks has helped in understanding and predicting the behavior of social, biological, and technological networked systems, including their robustness…

Physics and Society · Physics 2010-10-21 Scott A. Hill , Dan Braha

In general, the behavior of large and complex aggregates of elementary components can not be understood nor extrapolated from the properties of a few components. The brain is a good example of this type of networked systems where some…

Chaotic Dynamics · Physics 2012-08-02 Ricardo Lopez-Ruiz , Daniele Fournier-Prunaret

Animals learn tasks requiring a sequence of actions over time. Waiting a given time before taking an action is a simple example. Mimicry is a complex example, e.g. in humans, humming a brief tune you have just heard. Re-experiencing a…

Neurons and Cognition · Quantitative Biology 2009-10-15 J. J. Hopfield , Carlos D. Brody

Learning, inference, and emergence in biological and artificial systems are often studied within disparate theoretical frameworks, ranging from energy-based models to recurrent and attention-based architectures. Here we develop a unified…

Neurons and Cognition · Quantitative Biology 2026-01-22 Byung Gyu Chae

The activity patterns of highly developed cognitive systems like the human brain are dominated by autonomous dynamical processes, that is by a self-sustained activity which would be present even in the absence of external sensory stimuli.…

Neurons and Cognition · Quantitative Biology 2008-04-14 Claudius Gros , Gregor Kaczor

Measurement in biological systems became a subject of concern as a consequence of numerous reports on limited reproducibility of experimental results. To reveal origins of this inconsistency, we have examined general features of biological…

Other Quantitative Biology · Quantitative Biology 2017-04-03 Dalibor Štys , Jan Urban , Renata Rychtáriková , Anna Zhyrova , Petr Císař
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