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Geometric and structural constraints greatly restrict the selection of folds adapted by protein backbones, and yet, folded proteins show an astounding diversity in functionality. For structure to have any bearing on function, it is thus…

Biological Physics · Physics 2010-04-20 Brinda K. V. , Saraswathi Vishveshwara , Smitha Vishveshwara

The Extra-Cellular-Matrix (ECM) is a complex interconnected 3D network that provides structural support for the cells and tissues and defines organ architecture key for their healthy functioning. However, the intimate mechanisms by which…

Pairs of atomic scale terraces on a single crystal metal surface can be made to merge controllably under suitable conditions to yield steps of double height and width. We study the effect of various physical parameters on the formation of…

Materials Science · Physics 2009-11-10 Ajay Gopinathan , T. A. Witten

Motor-proteins are responsible for transport inside cells. Harnessing their activity is key towards developing new nano-technologies, or functional biomaterials. Cytoskeleton-like networks, recently tailored in vitro, result from the…

Soft Condensed Matter · Physics 2016-06-21 Pau Guillamat , Jordi Ignés-Mullol , Francesc Sagués

This paper presents a new defect model for the mixed mobile ion effect. The essential physical concept involved is that simultaneous migration of two unlike mobile ions in mixed ionic glass is accompanied by expansion or contraction of the…

Materials Science · Physics 2009-11-11 Vladimir Belostotsky

We study a system of coupled pendula with diffusive interactions, which could depend both on positions and on momenta. The coupling structure is defined by an undirected network, while the dynamic equations are derived from a Hamiltonian;…

Dynamical Systems · Mathematics 2024-08-06 Riccardo Bonetto , Hildeberto Jardón-Kojakhmetov , Christian Kuehn

We show how non-reciprocal ferromagnetic interactions between neighbouring planar spins in two dimensions, affect the behaviour of topological defects. Non-reciprocity is introduced by weighting the coupling strength of the two-dimensional…

Statistical Mechanics · Physics 2025-03-19 Ylann Rouzaire , Daniel JG Pearce , Ignacio Pagonabarraga , Demian Levis

We develop an approximate, analytical model for the velocity of defects in active nematics by combining recent results for the velocity of topological defects in nematic liquid crystals with the flow field generated from individual defects…

Soft Condensed Matter · Physics 2024-11-27 Cody D. Schimming , C. J. O. Reichhardt , C. Reichhardt

Myosin motor proteins drive vigorous steady-state fluctuations in the actin cytoskeleton of cells. Endogenous embedded semiflexible filaments such as microtubules, or added filaments such as single-walled carbon nanotubes are used as novel…

Biological Physics · Physics 2016-06-21 J. Gladrow , N. Fakhri , F. C. MacKintosh , C. F. Schmidt , C. P. Broedersz

Combinatorial mechanical metamaterials are made of anisotropic, flexible blocks, such that multiple metamaterials may be constructed using a single block type, and the system's response depends on the frustration (or its absence) due to the…

Soft Condensed Matter · Physics 2025-07-02 Chaviva Sirote-Katz , Yotam M. Y. Feldman , Guy Cohen , Tamás Kálmán , Yair Shokef

Understanding the relationship between the microscopic structure and topology of a material and its macroscopic properties is a fundamental challenge across a wide range of systems. Here, we investigate the viscoelasticity of DNA nanostar…

Soft Condensed Matter · Physics 2025-02-03 Giorgia Palombo , Simon Weir , Davide Michieletto , Yair Augusto Gutierrez Fosado

HyperSurfaces are a merge of structurally reconfigurable metasurfaces whose electromagnetic properties can be changed via a software interface, using an embedded miniaturized network of controllers, thus enabling novel capabilities in…

Topological defects are singularities in material fields that play a vital role across a range of systems: from cosmic microwave background polarization to superconductors, and biological materials. Although topological defects and their…

Soft Condensed Matter · Physics 2017-10-06 Luca Giomi , Žiga Kos , Miha Ravnik , Anupam Sengupta

The actin cytoskeleton is a key component in the machinery of eukaryotic cells, and it selfassembles out of equilibrium into a wide variety of biologically crucial structures. While the molecular mechanisms involved are well characterized,…

Soft Condensed Matter · Physics 2017-01-04 Giulia Foffano , Nicolas Levernier , Martin Lenz

When a nematic liquid crystal is confined in a porous medium with strong anchoring conditions, topological defects, called disclinations, are stably formed with numerous possible configurations. Since the energy barriers between them are…

Soft Condensed Matter · Physics 2015-06-12 Takeaki Araki

Capturing the dynamics of granular flows at intermediate length scales can often be difficult. We propose studying the dynamics of contact networks as a new tool to study fracture at intermediate scales. Using experimental three-dimensional…

Soft Condensed Matter · Physics 2012-08-17 Mark Herrera , Shane McCarthy , Steven Slotterback , Emmanuel Cephas , Wolfgang Losert , Michelle Girvan

The self-propulsion of +1/2 topological defects is a hallmark of active nematic fluids, where the defects are advected by the flow field they themselves generate. In this paper we propose a minimal model for defect self-propulsion in a…

Soft Condensed Matter · Physics 2025-08-08 Fridtjof Brauns , Myles O'Leary , Arthur Hernandez , Mark J. Bowick , M. Cristina Marchetti

We present a generic formulation of the continuum elasticity of an isotropic crosslinked active gel. The gel is described by a two-component model consisting of an elastic network coupled frictionally to a permeating fluid. Activity is…

Soft Condensed Matter · Physics 2011-04-22 Shiladitya Banerjee , M. Cristina Marchetti

The characterization of dynamical processes in living systems provides important clues for their mechanistic interpretation and link to biological functions. Thanks to recent advances in microscopy techniques, it is now possible to…

Data Analysis, Statistics and Probability · Physics 2023-11-29 Jesús Pineda , Benjamin Midtvedt , Harshith Bachimanchi , Sergio Noé , Daniel Midtvedt , Giovanni Volpe , Carlo Manzo

The elasticity of disordered and polydisperse polymer networks is a fundamental problem of soft matter physics that is still open. Here, we self-assemble polymer networks via simulations of a mixture of bivalent and tri- or tetravalent…