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Limitations in processing capabilities and memory of today's computers make spiking neuron-based (human) whole-brain simulations inevitably characterized by a compromise between bio-plausibility and computational cost. It translates into…

Neurons and Cognition · Quantitative Biology 2020-07-17 Gianluca Susi , Pilar Garces , Alessandro Cristini , Emanuele Paracone , Mario Salerno , Fernando Maestu , Ernesto Pereda

Multiscale phenomena manifest across various scientific domains, presenting a ubiquitous challenge in accurately and effectively simulating multiscale dynamics in complex systems. In this paper, a novel decoupling solving paradigm is…

Fluid Dynamics · Physics 2024-05-01 Jing Wang , Zheng Li , Pengyu Lai , Rui Wang , Di Yang , Dewu Yang , Hui Xu , Wen-Quan Tao

Deep learning models usually require sufficient training data to achieve high accuracy, but obtaining labeled data can be time-consuming and labor-intensive. Here we introduce a template-based training method to train a 3D U-Net model from…

Image and Video Processing · Electrical Eng. & Systems 2023-08-07 Fang-Cheng Yeh

We propose a design principle for the learning circuits of the biological brain. The principle states that almost any dendritic weights updated via heterosynaptic plasticity can implement a generalized and efficient class of gradient-based…

Neurons and Cognition · Quantitative Biology 2025-05-06 Liu Ziyin , Isaac Chuang , Tomaso Poggio

Mean-field models provide a link between microscopic neuronal activity and macroscopic brain dynamics. Their derivation depends on simplifying assumptions, such as all-to-all connectivity, limiting their biological realism. To overcome…

Neurons and Cognition · Quantitative Biology 2025-09-05 Martin Breyton , Viktor Sip , Marmaduke Woodman , Meysam Hashemi , Spase Petkoski , Viktor Jirsa

In exploring the simulation of human rhythmic perception and synchronization capabilities, this study introduces a computational model inspired by the physical and biological processes underlying rhythm processing. Utilizing a reservoir…

Neurons and Cognition · Quantitative Biology 2025-03-28 Zhongju Yuan , Wannes Van Ransbeeck , Geraint Wiggins , Dick Botteldooren

Brain connectivity analysis is crucial for understanding brain structure and neurological function, shedding light on the mechanisms of mental illness. To study the association between individual brain connectivity networks and the clinical…

Brain Computer Interface (BCI) technologies have the potential to improve the lives of millions of people around the world, whether through assistive technologies or clinical diagnostic tools. Despite advancements in the field, however, at…

Machine Learning · Computer Science 2023-01-31 Chad Mello , Troy Weingart , Ethan M. Rudd

Our brain consists of biological neurons encoding information through accurate spike timing, yet both the architecture and learning rules of our brain remain largely unknown. Comparing to the recent development of backpropagation-based…

Neural and Evolutionary Computing · Computer Science 2021-11-29 Yukun Yang , Peng Li

This short report describes the scaling, up to 1024 software processes and hardware cores, of a distributed simulator of plastic spiking neural networks. A previous report demonstrated good scalability of the simulator up to 128 processes.…

Computational models have become one of the prevalent methods to model complex phenomena. To accurately model complex interactions, such as detailed biomolecular interactions, scientists often rely on multiscale models comprised of several…

Human brain contains about 10 billion neurons, each of which has about 10~10,000 nerve endings from which neurotransmitters are released in response to incoming spikes, and the released neurotransmitters then bind to receptors located in…

Neurons and Cognition · Quantitative Biology 2012-03-06 Xuejuan Zhang , Jianfeng Feng

Efficient neural network models that generate brain-like dynamic activity can be a valuable resource for generating synthetic data, analyzing differences in brain transients under conditions such as testing perturbation activity or…

The recent success of deep learning applications has coincided with those widely available powerful computational resources for training sophisticated machine learning models with huge datasets. Nonetheless, training large models such as…

Machine Learning · Computer Science 2022-01-03 Farley Lai , Asim Kadav , Erik Kruus

Decentralized learning (DL) has gained prominence for its potential benefits in terms of scalability, privacy, and fault tolerance. It consists of many nodes that coordinate without a central server and exchange millions of parameters in…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-05-15 Akash Dhasade , Anne-Marie Kermarrec , Rafael Pires , Rishi Sharma , Milos Vujasinovic

Modeling the interplay between external stimuli and internal neural representations is a pivotal research area for Brain-Computer Interfaces (BCIs). A major limitation of prior work is the prevailing paradigm of specialized, single-task…

Artificial Intelligence · Computer Science 2026-05-29 Yizhuo Lu , Changde Du , Qingyu Shi , Hang Chen , Jie Peng , Liuyun Jiang , Shuangchen Zhao , Huiguang He

Developing physics-based models for molecular simulation requires fitting many unknown parameters to diverse experimental datasets. Traditionally, this process is piecemeal and difficult to reproduce, leading to a fragmented landscape of…

Biological Physics · Physics 2025-04-10 Ryan K. Krueger , Megan C. Engel , Ryan Hausen , Michael P. Brenner

This work presents a novel method of exploring human brain-visual representations, with a view towards replicating these processes in machines. The core idea is to learn plausible computational and biological representations by correlating…

Computer Vision and Pattern Recognition · Computer Science 2020-04-21 Simone Palazzo , Concetto Spampinato , Isaak Kavasidis , Daniela Giordano , Joseph Schmidt , Mubarak Shah

Recent studies have made great progress in functional brain network classification by modeling the brain as a network of Regions of Interest (ROIs) and leveraging their connections to understand brain functionality and diagnose mental…

Neurons and Cognition · Quantitative Biology 2025-07-22 Jiacheng Hou , Zhenjie Song , Ercan Engin Kuruoglu

Diffusion Magnetic Resonance Imaging (MRI) exploits the anisotropic diffusion of water molecules in the brain to enable the estimation of the brain's anatomical fiber tracts at a relatively high resolution. In particular, tractographic…

Computational Engineering, Finance, and Science · Computer Science 2016-09-14 Yu Jin , Joseph F. JaJa , Rong Chen , Edward H. Herskovits
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