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This open-source book represents our attempt to make deep learning approachable, teaching readers the concepts, the context, and the code. The entire book is drafted in Jupyter notebooks, seamlessly integrating exposition figures, math, and…

Machine Learning · Computer Science 2023-08-24 Aston Zhang , Zachary C. Lipton , Mu Li , Alexander J. Smola

Computational notebooks -- such as Jupyter or Colab -- combine text and data analysis code. They have become ubiquitous in the world of data science and exploratory data analysis. Since these notebooks present a different programming…

Software Engineering · Computer Science 2022-07-20 Derek Robinson , Neil A. Ernst , Enrique Larios Vargas , Margaret-Anne D. Storey

With new catalogues arriving such as the Gaia DR1, containing more than a billion objects, new methods of handling and visualizing these data volumes are needed. In visualization, one problem is that the number of datapoints can become so…

Instrumentation and Methods for Astrophysics · Physics 2017-06-14 Maarten A. Breddels

Computational notebook software such as Jupyter Notebook is popular for data science tasks. Numerous computational notebooks are available on the Web and reusable; however, searching for computational notebooks manually is a tedious task,…

Information Retrieval · Computer Science 2022-02-01 Misato Horiuchi , Yuya Sasaki , Chuan Xiao , Makoto Onizuka

TOPCAT, the Tool for OPerations on Catalogues And Tables, is an interactive desktop application for retrieval, analysis and manipulation of tabular data, offering a powerful and flexible range of interactive visualization options amongst…

Instrumentation and Methods for Astrophysics · Physics 2017-07-10 Mark Taylor

Semantic search, a process aimed at delivering highly relevant search results by comprehending the searcher's intent and the contextual meaning of terms within a searchable dataspace, plays a pivotal role in information retrieval. In this…

Information Retrieval · Computer Science 2024-02-21 Lan Li , Jinpeng Lv

Interactive development environments like Jupyter Notebooks enable incremental coding through cells with immediate feedback, but their linear structure and global namespace limit scalability for large software projects. We present CodePod,…

Software Engineering · Computer Science 2025-08-01 Hebi Li , Forrest Sheng Bao , Qi Xiao , Jin Tian

Scatterplots provide a visual representation of bivariate data (or 2D embeddings of multivariate data) that allows for effective analyses of data dependencies, clusters, trends, and outliers. Unfortunately, classical scatterplots suffer…

Human-Computer Interaction · Computer Science 2026-04-16 Hennes Rave , Vladimir Molchanov , Lars Linsen

The mapper algorithm is a popular tool from topological data analysis for extracting topological summaries of high-dimensional datasets. In this paper, we present Mapper Interactive, a web-based framework for the interactive analysis and…

Computational Geometry · Computer Science 2021-04-28 Youjia Zhou , Nithin Chalapathi , Archit Rathore , Yaodong Zhao , Bei Wang

Citing data and software is a means to give scholarly credit and to facilitate access to research objects. Citation principles encourage authors to provide full descriptions of objects, with stable links, in their papers. As Jupyter…

Digital Libraries · Computer Science 2020-04-28 Morgan F. Wofford , Bernadette M. Boscoe , Christine L. Borgman , Irene V. Pasquetto , Milena S. Golshan

Rapidly growing data sizes of scientific simulations pose significant challenges for interactive visualization and analysis techniques. In this work, we propose a compact probabilistic representation to interactively visualize large…

Graphics · Computer Science 2020-10-16 Tobias Rapp , Christoph Peters , Carsten Dachsbacher

By bringing together code, text, and examples, Jupyter notebooks have become one of the most popular means to produce scientific results in a productive and reproducible way. As many of the notebook authors are experts in their scientific…

Software Engineering · Computer Science 2019-06-13 Jiawei Wang , Li Li , Andreas Zeller

3D scatterplots are a well-established plotting technique that can be used to represent data with three or more dimensions. On paper and computer monitors they are essentially two-dimensional projections of the three-dimensional Cartesian…

Human-Computer Interaction · Computer Science 2026-01-05 Philippos Papaphilippou , Lucy Hederman

Interferometric scattering microscopy is a powerful technique that enables various applications, such as mass photometry and particle tracking. Here we present a numerical toolbox to simulate images obtained in interferometric scattering,…

Charts are an excellent way to convey patterns and trends in data, but they do not facilitate further modeling of the data or close inspection of individual data points. We present a fully automated system for extracting the numerical…

Computer Vision and Pattern Recognition · Computer Science 2018-10-10 Mathieu Cliche , David Rosenberg , Dhruv Madeka , Connie Yee

Using computational notebooks (e.g., Jupyter Notebook), data scientists rationalize their exploratory data analysis (EDA) based on their prior experience and external knowledge such as online examples. For novices or data scientists who…

Human-Computer Interaction · Computer Science 2021-12-16 Xingjun Li , Yizhi Zhang , Justin Leung , Chengnian Sun , Jian Zhao

Computational notebooks have become the tool of choice for many data scientists and practitioners for performing analyses and disseminating results. Despite their increasing popularity, the research community cannot yet count on a large,…

Databases · Computer Science 2021-06-01 Luigi Quaranta , Fabio Calefato , Filippo Lanubile

The Minnesota Supercomputing Institute has implemented Jupyterhub and the Jupyter notebook server as a general-purpose point-of-entry to interactive high performance computing services. This mode of operation runs counter to traditional…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-07-27 Michael Milligan

The accuracy of recommender systems influences their trust and decision-making when using them. Providing additional information, such as visualizations, offers context that would otherwise be lacking. However, the role of visualizations in…

Human-Computer Interaction · Computer Science 2024-09-24 Bhavana Doppalapudi , Md Dilshadur Rahman , Paul Rosen

There is a gap between how people explore data and how Jupyter-like computational notebooks are designed. People explore data nonlinearly, using execution undos, branching, and/or complete reverts, whereas notebooks are designed for…

Human-Computer Interaction · Computer Science 2025-04-03 Hanxi Fang , Supawit Chockchowwat , Hari Sundaram , Yongjoo Park