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Related papers: Nutmeg and SPICE: Models and Data for Biomolecular…

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We introduce a method to convert Physics-Informed Neural Networks (PINNs), commonly used in scientific machine learning, to Spiking Neural Networks (SNNs), which are expected to have higher energy efficiency compared to traditional…

Neural and Evolutionary Computing · Computer Science 2023-09-01 Qian Zhang , Chenxi Wu , Adar Kahana , Youngeun Kim , Yuhang Li , George Em Karniadakis , Priyadarshini Panda

Machine learning potentials have emerged as a means to enhance the accuracy of biomolecular simulations. However, their application is constrained by the significant computational cost arising from the vast number of parameters compared to…

Designing a neural network architecture for molecular representation is crucial for AI-driven drug discovery and molecule design. In this work, we propose a new framework for molecular representation learning. Our contribution is threefold:…

Machine Learning · Computer Science 2022-10-18 Jiye Kim , Seungbeom Lee , Dongwoo Kim , Sungsoo Ahn , Jaesik Park

Molecular dynamics simulations offer detailed insights into atomic motions but face timescale limitations. Enhanced sampling methods have addressed these challenges but even with machine learning, they often rely on pre-selected…

Machine Learning · Computer Science 2024-09-19 Ziyue Zou , Dedi Wang , Pratyush Tiwary

Experimental grain growth observations often deviate from grain growth simulations, revealing that the governing rules for grain boundary motion are not fully understood. A novel deep learning model was developed to capture grain growth…

Embedded systems acquire information about the real world from sensors and process it to make decisions and/or for transmission. In some situations, the relationship between the data and the decision is complex and/or the amount of data to…

Machine Learning · Computer Science 2021-06-29 Florian Bacho , Dominique Chu

Populations of neurons display an extraordinary diversity in the behaviors they affect and display. Machine learning techniques have recently emerged that allow us to create networks of model neurons that display behaviours of similar…

Neurons and Cognition · Quantitative Biology 2018-02-07 Wilten Nicola , Claudia Clopath

$\textbf{Formal version available at}$ https://cell.com/patterns/fulltext/S2666-3899(23)00200-3 Networks of spiking neurons underpin the extraordinary information-processing capabilities of the brain and have become pillar models in…

Neural and Evolutionary Computing · Computer Science 2023-09-18 Gehua Ma , Rui Yan , Huajin Tang

Constructing first-principles models is usually a challenging and time-consuming task due to the complexity of the real-life processes. On the other hand, data-driven modeling, and in particular neural network models often suffer from…

Optimization and Control · Mathematics 2023-02-03 Ece S. Koksal , Erdal Aydin

Convolutional Neural Networks (CNN) are very popular in many fields including computer vision, speech recognition, natural language processing, to name a few. Though deep learning leads to groundbreaking performance in these domains, the…

Computer Vision and Pattern Recognition · Computer Science 2021-09-21 Chaim Baskin , Natan Liss , Yoav Chai , Evgenii Zheltonozhskii , Eli Schwartz , Raja Giryes , Avi Mendelson , Alexander M. Bronstein

The inherent dynamics of the neuron membrane potential in Spiking Neural Networks (SNNs) allows processing of sequential learning tasks, avoiding the complexity of recurrent neural networks. The highly-sparse spike-based computations in…

Hardware Architecture · Computer Science 2021-07-09 Amogh Agrawal , Mustafa Ali , Minsuk Koo , Nitin Rathi , Akhilesh Jaiswal , Kaushik Roy

Model distillation enables the transfer of knowledge from large-scale models to compact student models, facilitating deployment in resource-constrained environments. However, conventional distillation approaches often suffer from…

Machine Learning · Computer Science 2025-08-21 Suleyman Olcay Polat , Poli A. Nemkova , Mark V. Albert

The integration of Scientific Machine Learning (SciML) techniques with uncertainty quantification (UQ) represents a rapidly evolving frontier in computational science. This work advances Physics-Informed Neural Networks (PINNs) by…

Machine Learning · Statistics 2025-12-30 Georgios Arampatzis , Stylianos Katsarakis , Charalambos Makridakis

This paper describes the development of the Four Model Tree Ensemble (FMTE). The FMTE is a composite of machine learning models trained on experimental binding energies from the Atomic Mass Evaluation (AME) 2012. The FMTE predicts binding…

Nuclear Theory · Physics 2026-02-19 I. Bentley , J. Tedder , M. Gebran , A. Paul

Spiking neural networks are a type of artificial neural networks in which communication between neurons is only made of events, also called spikes. This property allows neural networks to make asynchronous and sparse computations and…

Neural and Evolutionary Computing · Computer Science 2024-05-07 Florent De Geeter , Damien Ernst , Guillaume Drion

The article proposes a conceptual approach for evaluating the impact of engineered nanoparticles (NPs) on the functionality of small biomolecules. The developed machine learning (ML) model is based on in-silico 13C NMR spectroscopy chemical…

Other Quantitative Biology · Quantitative Biology 2026-03-23 Mariya L Ivanova , Michael Nichols , Nicola Russo , Gueorgui Mihaylov , Konstantin Nikolic

In this research, we introduce an innovative three-network architecture that comprises an encoder-decoder framework with an attention mechanism. The architecture comprises a 1st-order-pre-trainer, a 2nd-order-improver, and a discriminator…

Computational Physics · Physics 2023-11-28 Jian-Nan Chen , Jun-Jie Zhang

SMILES is a linear representation of chemical structures which encodes the connection table, and the stereochemistry of a molecule as a line of text with a grammar structure denoting atoms, bonds, rings and chains, and this information can…

Machine Learning · Computer Science 2018-12-03 Arindam Paul , Dipendra Jha , Reda Al-Bahrani , Wei-keng Liao , Alok Choudhary , Ankit Agrawal

Intelligence relies on an agent's knowledge of what it does not know. This capability can be assessed based on the quality of joint predictions of labels across multiple inputs. In principle, ensemble-based approaches produce effective…

Spiking Neural Networks (SNN) are energy-efficient computing architectures that exchange spikes for processing information, unlike classical Artificial Neural Networks (ANN). Due to this, SNNs are better suited for real-life deployments.…

Neural and Evolutionary Computing · Computer Science 2020-05-04 Ravi Kumar Kushawaha , Saurabh Kumar , Biplab Banerjee , Rajbabu Velmurugan