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Related papers: Nutmeg and SPICE: Models and Data for Biomolecular…

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Small molecule protonation is an important part of the preparation of small molecules for many types of computational chemistry protocols. For this, a correct estimation of the pKa values of the protonation sites of molecules is required.…

Quantitative Methods · Quantitative Biology 2024-07-17 Nikolai Schapin , Maciej Majewski , Mariona Torrens-Fontanals , Gianni De Fabritiis

Scientific Machine Learning (SciML) integrates physics and data into the learning process, offering improved generalization compared with purely data-driven models. Despite its potential, applications of SciML in prognostics remain limited,…

Machine Learning · Computer Science 2025-11-04 Ibai Ramirez , Jokin Alcibar , Joel Pino , Mikel Sanz , David Pardo , Jose I. Aizpurua

Neuromorphic systems using in-memory or event-driven computing are motivated by the need for more energy-efficient processing of artificial intelligence workloads. Emerging neuromorphic architectures aim to combine traditional digital…

Hardware Architecture · Computer Science 2025-07-21 Jason Ho , James A. Boyle , Linshen Liu , Andreas Gerstlauer

Representing molecular structures effectively in chemistry remains a challenging task. Language models and graph-based models are extensively utilized within this domain, consistently achieving state-of-the-art results across an array of…

Machine Learning · Computer Science 2025-05-27 Nikolai Rekut , Alexey Orlov , Klea Ziu , Elizaveta Starykh , Martin Takac , Aleksandr Beznosikov

In integrated circuit design, the analysis of wafer map patterns is critical to improve yield and detect manufacturing issues. We develop Wafer2Spike, an architecture for wafer map pattern classification using a spiking neural network…

Neural and Evolutionary Computing · Computer Science 2024-12-02 Abhishek Mishra , Suman Kumar , Anush Lingamoorthy , Anup Das , Nagarajan Kandasamy

Multiphysics problems that are characterized by complex interactions among fluid dynamics, heat transfer, structural mechanics, and electromagnetics, are inherently challenging due to their coupled nature. While experimental data on certain…

Machine Learning · Computer Science 2024-10-16 Khemraj Shukla , Zongren Zou , Chi Hin Chan , Additi Pandey , Zhicheng Wang , George Em Karniadakis

As the atomistic simulations of materials science move from traditional potentials to machine learning interatomic potential (MLIP), the field is entering the second phase focused on discovering and explaining new material phenomena. While…

Materials Science · Physics 2025-01-27 Musanna Galib , Mewael Isiet , Mauricio Ponga

We present machine learning models based on kernel-ridge regression for predicting X-ray photoelectron spectra of organic molecules originating from the $K$-shell ionization energies of carbon (C), nitrogen (N), oxygen (O), and fluorine (F)…

Chemical Physics · Physics 2024-08-16 Susmita Tripathy , Surajit Das , Shweta Jindal , Raghunathan Ramakrishnan

Although memristive devices with threshold voltages are the norm rather than the exception in experimentally realizable systems, their SPICE programming is not yet common. Here, we show how to implement such systems in the SPICE…

Computational Physics · Physics 2013-07-09 Y. V. Pershin , M. Di Ventra

Universal machine-learned potentials promise transferable accuracy across compositional and vibrational degrees of freedom, yet their application to biomolecular simulations remains underexplored. This work systematically evaluates…

Chemical Physics · Physics 2025-08-15 Viktor Zaverkin , Matheus Ferraz , Francesco Alesiani , Mathias Niepert

With the emergence of Foundational Machine Learning Interatomic Potential (FMLIP) models trained on extensive datasets, transferring data between different ML architectures has become increasingly important. In this work, we examine the…

We introduce AceFF, a pre-trained machine learning interatomic potential (MLIP) optimized for small molecule drug discovery. While MLIPs have emerged as efficient alternatives to Density Functional Theory (DFT), generalizability across…

Spiking neural networks are nature's versatile solution to fault-tolerant and energy efficient signal processing. To translate these benefits into hardware, a growing number of neuromorphic spiking neural network processors attempt to…

Neural and Evolutionary Computing · Computer Science 2019-05-06 Emre O. Neftci , Hesham Mostafa , Friedemann Zenke

In this paper, a family of neural network-based survival models is presented. The models are specified based on piecewise definitions of the hazard function and the density function on a partitioning of the time; both constant and linear…

Machine Learning · Statistics 2024-03-28 Olov Holmer , Erik Frisk , Mattias Krysander

Humans learn adaptively and efficiently throughout their lives. However, incrementally learning tasks causes artificial neural networks to overwrite relevant information learned about older tasks, resulting in 'Catastrophic Forgetting'.…

Machine Learning · Computer Science 2021-02-04 Gobinda Saha , Isha Garg , Aayush Ankit , Kaushik Roy

The Spiking Neural Network (SNN), a biologically inspired neural network infrastructure, has garnered significant attention recently. SNNs utilize binary spike activations for efficient information transmission, replacing multiplications…

Computer Vision and Pattern Recognition · Computer Science 2025-06-10 Yufei Guo , Yuhan Zhang , Zhou Jie , Xiaode Liu , Xin Tong , Yuanpei Chen , Weihang Peng , Zhe Ma

Molecular representation learning is pivotal for various molecular property prediction tasks related to drug discovery. Robust and accurate benchmarks are essential for refining and validating current methods. Existing molecular property…

Chemical Physics · Physics 2024-06-27 Shikun Feng , Jiaxin Zheng , Yinjun Jia , Yanwen Huang , Fengfeng Zhou , Wei-Ying Ma , Yanyan Lan

Convolutional neural networks (CNN) have been shown to provide a good solution for classification problems that utilize data obtained from vibrational spectroscopy. Moreover, CNNs are capable of identification from noisy spectra without the…

Signal Processing · Electrical Eng. & Systems 2018-06-27 Jinchao Liu , Stuart J. Gibson , James Mills , Margarita Osadchy

Spiking Neural Networks (SNNs) are biologically inspired machine learning models that build on dynamic neuronal models processing binary and sparse spiking signals in an event-driven, online, fashion. SNNs can be implemented on neuromorphic…

Neural and Evolutionary Computing · Computer Science 2020-12-10 Hyeryung Jang , Nicolas Skatchkovsky , Osvaldo Simeone

Traditional neuron models use analog values for information representation and computation, while all-or-nothing spikes are employed in the spiking ones. With a more brain-like processing paradigm, spiking neurons are more promising for…

Neural and Evolutionary Computing · Computer Science 2021-02-05 Qiang Yu , Shiming Song , Chenxiang Ma , Linqiang Pan , Kay Chen Tan
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