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Related papers: Nutmeg and SPICE: Models and Data for Biomolecular…

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In a previous paper [Fan Z \textit{et al}. 2021 Phys. Rev. B, \textbf{104}, 104309], we developed the neuroevolution potential (NEP), a framework of training neural network based machine-learning potentials using a natural evolution…

Computational Physics · Physics 2022-01-25 Zheyong Fan

Nanoparticles (NPs) formed in nonthermal plasmas (NTPs) can have unique properties and applications. However, modeling their growth in these environments presents significant challenges due to the non-equilibrium nature of NTPs, making them…

Computational Physics · Physics 2025-01-03 Matt Raymond , Paolo Elvati , Jacob C. Saldinger , Jonathan Lin , Xuetao Shi , Angela Violi

Clock meshes are essential in high-performance VLSI systems for minimizing skew and handling PVT variations, but analyzing them is difficult due to reconvergent paths, multi-source driving, and input mesh buffer skew. SPICE simulations are…

Hardware Architecture · Computer Science 2025-07-09 Muhammad Hadir Khan , Matthew Guthaus

For reasons such as privacy, there are use cases for language models at the edge. This has given rise to small language models targeted for deployment in resource-constrained devices where energy efficiency is critical. Spiking neural…

Neural and Evolutionary Computing · Computer Science 2026-01-05 Kaiwen Tang , Zhanglu Yan , Weng-Fai Wong

In drug discovery, predicting the absorption, distribution, metabolism, excretion, and toxicity (ADMET) properties of small-molecule drugs is critical for ensuring safety and efficacy. However, the process of accurately predicting these…

Machine Learning · Computer Science 2026-03-27 Bohao Xu , Yingzhou Lu , Chenhao Li , Ling Yue , Xiao Wang , Tianfan Fu , Minjie Shen , Lulu Chen

Artificial intelligence, trained via machine learning or computational statistics algorithms, holds much promise for the improvement of small molecule drug discovery. However, structure-activity data are high dimensional with low…

Applications · Statistics 2018-07-25 Oliver Watson , Isidro Cortes-Ciriano , Aimee Taylor , James A Watson

Inspired by Pople diagrams popular in quantum chemistry, we introduce a hierarchical scheme, based on the multi-level combination (C) technique, to combine various levels of approximations made when calculating molecular energies within…

Chemical Physics · Physics 2018-08-10 Peter Zaspel , Bing Huang , Helmut Harbrecht , O. Anatole von Lilienfeld

Spiking Neural Networks (SNNs), as a biologically plausible alternative to Artificial Neural Networks (ANNs), have demonstrated advantages in terms of energy efficiency, temporal processing, and biological plausibility. However, SNNs are…

Machine Learning · Computer Science 2025-09-22 Xinyu Luo , Kecheng Chen , Pao-Sheng Vincent Sun , Chris Xing Tian , Arindam Basu , Haoliang Li

An image dataset of 10 different size molecules, where each molecule has 2,000 structural variants, is generated from the 2D cross-sectional projection of Molecular Dynamics trajectories. The purpose of this dataset is to provide a…

Image and Video Processing · Electrical Eng. & Systems 2019-11-19 Yan Zhang , Steve Farrell , Michael Crowley , Lee Makowski , Jack Deslippe

Deep learning has led to a paradigm shift in artificial intelligence, including web, text and image search, speech recognition, as well as bioinformatics, with growing impact in chemical physics. Machine learning in general and deep…

We propose a construction for joint feature learning and clustering of multichannel extracellular electrophysiological data across multiple recording periods for action potential detection and discrimination ("spike sorting"). Our…

The adaptive changes in synaptic efficacy that occur between spiking neurons have been demonstrated to play a critical role in learning for biological neural networks. Despite this source of inspiration, many learning focused applications…

Neural and Evolutionary Computing · Computer Science 2022-05-30 Samuel Schmidgall , Julia Ashkanazy , Wallace Lawson , Joe Hays

We revisit the additive model learning literature and adapt a penalized spline formulation due to Eilers and Marx, to train additive classifiers efficiently. We also propose two new embeddings based two classes of orthogonal basis with…

Computer Vision and Pattern Recognition · Computer Science 2011-10-06 Subhransu Maji

Mapping microstructure to properties is central to materials science. Perhaps most famously, the Hall-Petch relationship relates average grain size to strength. More challenging has been deriving relationships for properties that depend on…

Materials Science · Physics 2026-01-06 Brian H. Lee , Chunyu Li , Aidan Pantoya , James P. Larentzos , John K. Brennan , Alejandro Strachan

Spiking neural networks (SNNs) provide an energy-efficient solution by utilizing the spike-based and sparse nature of biological systems. Since the advent of Transformers, SNNs have struggled to compete with artificial networks on long…

Neural and Evolutionary Computing · Computer Science 2024-10-24 Yan Zhong , Ruoyu Zhao , Chao Wang , Qinghai Guo , Jianguo Zhang , Zhichao Lu , Luziwei Leng

Effective representation of molecules is a crucial factor affecting the performance of artificial intelligence models. This study introduces a flexible, fragment-based, multiscale molecular representation framework called t-SMILES…

Machine Learning · Computer Science 2024-05-22 Juan-Ni Wu , Tong Wang , Yue Chen , Li-Juan Tang , Hai-Long Wu , Ru-Qin Yu

On-chip edge intelligence has necessitated the exploration of algorithmic techniques to reduce the compute requirements of current machine learning frameworks. This work aims to bridge the recent algorithmic progress in training Binary…

Machine Learning · Computer Science 2020-10-28 Sen Lu , Abhronil Sengupta

Machine learning methods have revolutionized the discovery process of new molecules and materials. However, the intensive training process of neural networks for molecules with ever-increasing complexity has resulted in exponential growth…

Emerging Technologies · Computer Science 2022-12-27 Hui Zhang , Jonathan Wei Zhong Lau , Lingxiao Wan , Liang Shi , Hong Cai , Xianshu Luo , Patrick Lo , Chee-Kong Lee , Leong-Chuan Kwek , Ai Qun Liu

Among the main features of biological intelligence are energy efficiency, capacity for continual adaptation, and risk management via uncertainty quantification. Neuromorphic engineering has been thus far mostly driven by the goal of…

Neural and Evolutionary Computing · Computer Science 2022-11-02 Nicolas Skatchkovsky , Hyeryung Jang , Osvaldo Simeone

Enzymes and proteins are live driven biochemicals, which has a dramatic impact over the environment, in which it is active. So, therefore, it is highly looked-for to build such a robust and highly accurate automatic and computational model…

Biomolecules · Quantitative Biology 2021-01-11 Zaheer Ullah Khan , Dechang Pi , Izhar Ahmed Khan , Asif Nawaz , Jamil Ahmad , Mushtaq Hussain
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