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Many registration problems are ill-posed in homogeneous or noisy regions, and dense voxel-wise decoders can be unnecessarily high-dimensional. A sparse control-point parameterisation provides a compact, smooth deformation representation…

Image and Video Processing · Electrical Eng. & Systems 2026-03-19 Wen Yan , Qianye Yang , Yipei Wang , Shonit Punwani , Mark Emberton , Vasilis Stavrinides , Yipeng Hu , Dean Barratt

Understanding how grid cells perform path integration calculations remains a fundamental problem. In this paper, we conduct theoretical analysis of a general representation model of path integration by grid cells, where the 2D self-position…

Neurons and Cognition · Quantitative Biology 2021-11-04 Ruiqi Gao , Jianwen Xie , Xue-Xin Wei , Song-Chun Zhu , Ying Nian Wu

Implicit neural networks have emerged as a crucial technology in 3D surface reconstruction. To reconstruct continuous surfaces from discrete point clouds, encoding the input points into regular grid features (plane or volume) has been…

Computer Vision and Pattern Recognition · Computer Science 2024-01-05 Shengtao Li , Ge Gao , Yudong Liu , Yu-Shen Liu , Ming Gu

A crucial step in the early development of multicellular organisms involves the establishment of spatial patterns of gene expression which later direct proliferating cells to take on different cell fates. These patterns enable the cells to…

Molecular Networks · Quantitative Biology 2017-02-08 Patrick Hillenbrand , Ulrich Gerland , Gasper Tkacik

Transformer architecture has enabled recent progress in speech enhancement. Since Transformers are position-agostic, positional encoding is the de facto standard component used to enable Transformers to distinguish the order of elements in…

Audio and Speech Processing · Electrical Eng. & Systems 2024-02-15 Qiquan Zhang , Meng Ge , Hongxu Zhu , Eliathamby Ambikairajah , Qi Song , Zhaoheng Ni , Haizhou Li

In transformers, the positional encoding (PE) provides essential information that distinguishes the position and order amongst tokens in a sequence. Most prior investigations of PE effects on generalization were tailored to 1D input…

Machine Learning · Computer Science 2025-06-24 Takuya Ito , Luca Cocchi , Tim Klinger , Parikshit Ram , Murray Campbell , Luke Hearne

Relative position encoding (RPE) is important for transformer to capture sequence ordering of input tokens. General efficacy has been proven in natural language processing. However, in computer vision, its efficacy is not well studied and…

Computer Vision and Pattern Recognition · Computer Science 2021-07-30 Kan Wu , Houwen Peng , Minghao Chen , Jianlong Fu , Hongyang Chao

Positional encodings (PEs) are essential for effective graph representation learning because they provide position awareness in inherently position-agnostic transformer architectures and increase the expressive capacity of Graph Neural…

Machine Learning · Computer Science 2025-02-04 Charilaos I. Kanatsoulis , Evelyn Choi , Stephanie Jegelka , Jure Leskovec , Alejandro Ribeiro

Positional encoding has become a standard component in graph learning, especially for graph Transformers and other models that must distinguish structurally similar nodes, yet its fundamental identifiability remains poorly understood. In…

Information Theory · Computer Science 2026-03-27 Zimo Yan , Zheng Xie , Chang Liu , Yiqin Lv , Runfan Duan

Diffusion Transformers (DiTs) have emerged as the dominant architecture for visual generation, powering state-of-the-art image and video models. By representing images as patch tokens with positional encodings (PEs), DiTs combine…

Computer Vision and Pattern Recognition · Computer Science 2025-10-24 Yunpeng Bai , Haoxiang Li , Qixing Huang

Transformers exhibit proficiency in capturing long-range dependencies, whereas State Space Models (SSMs) facilitate linear-time sequence modeling. Notwithstanding their synergistic potential, the integration of these architectures presents…

Computation and Language · Computer Science 2025-06-19 Bingheng Wu , Jingze Shi , Yifan Wu , Nan Tang , Yuyu Luo

Hippocampal place cells can encode spatial locations of an animal in physical or task-relevant spaces. We simulated place cell populations that encoded either Euclidean- or graph-based positions of a rat navigating to goal nodes in a maze…

Neurons and Cognition · Quantitative Biology 2022-11-17 Thibault Niederhauser , Adam Lester , Nina Miolane , Khanh Dao Duc , Manu S. Madhav

In this contribution, we demonstrate that Graph Neural Networks and Transformers can learn to reason about geometric constraints. We train them to predict spatial position of points in a discrete 2D grid from a set of constraints that…

Machine Learning · Computer Science 2026-03-03 Jan Hůla , David Mojžíšek , Jiří Janeček , David Herel , Mikoláš Janota

Neural Radiance Fields (NeRFs) have emerged as powerful tools for capturing detailed 3D scenes through continuous volumetric representations. Recent NeRFs utilize feature grids to improve rendering quality and speed; however, these…

Computer Vision and Pattern Recognition · Computer Science 2024-06-14 Tuan Pham , Stephan Mandt

Predicting the evolution of spatiotemporal physical systems from sparse and scattered observational data poses a significant challenge in various scientific domains. Traditional methods rely on dense grid-structured data, limiting their…

Machine Learning · Computer Science 2024-03-29 Andrzej Dulny , Paul Heinisch , Andreas Hotho , Anna Krause

Transformer models are permutation equivariant. To supply the order and type information of the input tokens, position and segment embeddings are usually added to the input. Recent works proposed variations of positional encodings with…

Computation and Language · Computer Science 2021-11-04 Pu-Chin Chen , Henry Tsai , Srinadh Bhojanapalli , Hyung Won Chung , Yin-Wen Chang , Chun-Sung Ferng

Cycles are fundamental elements in graph-structured data and have demonstrated their effectiveness in enhancing graph learning models. To encode such information into a graph learning framework, prior works often extract a summary quantity,…

Machine Learning · Computer Science 2023-12-01 Zuoyu Yan , Tengfei Ma , Liangcai Gao , Zhi Tang , Chao Chen , Yusu Wang

Comprehending how the brain interacts with the external world through generated neural data is crucial for determining its working mechanism, treating brain diseases, and understanding intelligence. Although many theoretical models have…

Artificial Intelligence · Computer Science 2026-04-24 Jingyi Feng , Chenming Zhang

In this work, we theoretically demonstrate that current graph positional encodings (PEs) are not beneficial and could potentially hurt performance in tasks involving heterophilous graphs, where nodes that are close tend to have different…

Machine Learning · Computer Science 2025-04-30 Michael Ito , Jiong Zhu , Dexiong Chen , Danai Koutra , Jenna Wiens

Transformers rely on explicit positional encoding to model structure in data. While Rotary Position Embedding (RoPE) excels in 1D domains, its application to image generation reveals significant limitations such as fine-grained spatial…

Computer Vision and Pattern Recognition · Computer Science 2026-03-13 Jiaye Li , Baoyou Chen , Hui Li , Zilong Dong , Jingdong Wang , Siyu Zhu
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