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Positional encoding plays a crucial role in transformers, significantly impacting model performance and length generalization. Prior research has introduced absolute positional encoding (APE) and relative positional encoding (RPE) to…

Computation and Language · Computer Science 2024-11-06 Chuanyang Zheng , Yihang Gao , Han Shi , Minbin Huang , Jingyao Li , Jing Xiong , Xiaozhe Ren , Michael Ng , Xin Jiang , Zhenguo Li , Yu Li

Graph neural networks (GNNs) have become the standard learning architectures for graphs. GNNs have been applied to numerous domains ranging from quantum chemistry, recommender systems to knowledge graphs and natural language processing. A…

Machine Learning · Computer Science 2022-02-11 Vijay Prakash Dwivedi , Anh Tuan Luu , Thomas Laurent , Yoshua Bengio , Xavier Bresson

The hippocampus supports spatial navigation by encoding cognitive maps through collective place cell activity. We model the place cell population as non-negative spatial embeddings derived from the spectral decomposition of multi-step…

Neurons and Cognition · Quantitative Biology 2025-10-28 Minglu Zhao , Dehong Xu , Deqian Kong , Wen-Hao Zhang , Ying Nian Wu

While music remains a challenging domain for generative models like Transformers, recent progress has been made by exploiting suitable musically-informed priors. One technique to leverage information about musical structure in Transformers…

Sound · Computer Science 2025-02-18 Manvi Agarwal , Changhong Wang , Gael Richard

Transformer-based methods have swept the benchmarks on 2D and 3D detection on images. Because tokenization before the attention mechanism drops the spatial information, positional encoding becomes critical for those methods. Recent works…

Computer Vision and Pattern Recognition · Computer Science 2023-07-31 Changyong Shu , JIajun Deng , Fisher Yu , Yifan Liu

Multimodal position encoding is essential for vision-language models, yet there has been little systematic investigation into multimodal position encoding. We conduct a comprehensive analysis of multimodal Rotary Positional Embedding (RoPE)…

Computer Vision and Pattern Recognition · Computer Science 2026-04-07 Jie Huang , Xuejing Liu , Sibo Song , Ruibing Hou , Hong Chang , Junyang Lin , Shuai Bai

Spatial reasoning focuses on locating target objects based on spatial relations in 3D scenes, which plays a crucial role in developing intelligent embodied agents. Due to the limited availability of 3D scene-language paired data, it is…

Computer Vision and Pattern Recognition · Computer Science 2026-03-27 Shengli Zhou , Minghang Zheng , Feng Zheng , Yang Liu

Many real-world problems require reasoning across multiple scales, demanding models which operate not on single data points, but on entire distributions. We introduce generative distribution embeddings (GDE), a framework that lifts…

Machine Learning · Computer Science 2026-02-23 Nic Fishman , Gokul Gowri , Peng Yin , Jonathan Gootenberg , Omar Abudayyeh

Spatial representation learning is essential for GeoAI applications such as urban analytics, enabling the encoding of shapes, locations, and spatial relationships (topological and distance-based) of geo-entities like points, polylines, and…

Computer Vision and Pattern Recognition · Computer Science 2025-08-28 Chen Chu , Cyrus Shahabi

Grid cells in the medial entorhinal cortex and place cells in the hippocampus together support spatial navigation. The two regions are reciprocally connected, and there is a chicken-and-egg problem for how both arise and reinforce each…

Neurons and Cognition · Quantitative Biology 2026-05-21 Zhaoze Wang , Genela Morris , Dori Derdikman , Pratik Chaudhari , Vijay Balasubramanian

We introduce STRING: Separable Translationally Invariant Position Encodings. STRING extends Rotary Position Encodings, a recently proposed and widely used algorithm in large language models, via a unifying theoretical framework.…

Position representation is crucial for building position-aware representations in Transformers. Existing position representations suffer from a lack of generalization to test data with unseen lengths or high computational cost. We…

Computation and Language · Computer Science 2021-09-14 Shun Kiyono , Sosuke Kobayashi , Jun Suzuki , Kentaro Inui

The grid cells (GCs) of the medial entorhinal cortex (MEC) and place cells (PCs) of the hippocampus are key elements of the brain network for the metric representation of space. Currently, any of the existing theoretical models can explain…

Neurons and Cognition · Quantitative Biology 2015-07-01 Andrey Stepanyuk

Since their Nobel Prize winning discovery in 2005, grid cells have been studied extensively by neuroscientists. Their multi-scale periodic firing rates tiling the environment as the animal moves around has been shown as critical for path…

Neurons and Cognition · Quantitative Biology 2022-10-24 Jason Toy

The local inductive bias of message-passing graph neural networks (GNNs) hampers their ability to exploit key structural information (e.g., connectivity and cycles). Positional encoding (PE) and Persistent Homology (PH) have emerged as two…

Machine Learning · Computer Science 2025-06-09 Yogesh Verma , Amauri H. Souza , Vikas Garg

Positional encoding (PE) underpins how permutation-invariant Transformers represent sequence order, yet how positional information is processed and stored remains poorly understood. Modern PE methods such as RoPE still struggle on tasks…

Computation and Language · Computer Science 2026-05-29 Pierre-Antoine Lequeu , Camille Barboule , Benjamin Piwowarski

Positional embeddings (PE) play a crucial role in Vision Transformers (ViTs) by providing spatial information otherwise lost due to the permutation invariant nature of self attention. While absolute positional embeddings (APE) have shown…

Computer Vision and Pattern Recognition · Computer Science 2026-04-14 Md Abtahi Majeed Chowdhury , Md Rifat Ur Rahman , Akil Ahmad Taki

This paper investigates the conformal isometry hypothesis as a potential explanation for the hexagonal periodic patterns in grid cell response maps. We posit that grid cell activities form a high-dimensional vector in neural space, encoding…

Neurons and Cognition · Quantitative Biology 2025-02-28 Dehong Xu , Ruiqi Gao , Wen-Hao Zhang , Xue-Xin Wei , Ying Nian Wu

Multilayer perceptrons (MLPs) have been successfully used to represent 3D shapes implicitly and compactly, by mapping 3D coordinates to the corresponding signed distance values or occupancy values. In this paper, we propose a novel…

Computer Vision and Pattern Recognition · Computer Science 2021-10-29 Peng-Shuai Wang , Yang Liu , Yu-Qi Yang , Xin Tong

All tables can be represented as grids. Based on this observation, we propose GridFormer, a novel approach for interpreting unconstrained table structures by predicting the vertex and edge of a grid. First, we propose a flexible table…

Computer Vision and Pattern Recognition · Computer Science 2023-09-27 Pengyuan Lyu , Weihong Ma , Hongyi Wang , Yuechen Yu , Chengquan Zhang , Kun Yao , Yang Xue , Jingdong Wang
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