Related papers: A bijection for the evolution of $B$-trees
In this paper, we confirm conjectures of Laborde-Zubieta on the enumeration of corners in tree-like tableaux and in symmetric tree-like tableaux. In the process, we also enumerate corners in (type $B$) permutation tableaux and (symmetric)…
This paper presents a bijection between ascent sequences and upper triangular matrices whose non-negative entries are such that all rows and columns contain at least one non-zero entry. We show the equivalence of several natural statistics…
Background: Tree reconciliation problems have long been studied in phylogenetics. A particular variant of the reconciliation problem for a gene tree T and a species tree S assumes that for each interior vertex x of T it is known whether x…
This report details the generation and use of tree node ordering keys in a single relational database table. The keys for each node are calculated from the keys of its parent, in such a way that the sort order places every node in the tree…
A Behavior Tree (BT) is a way to structure the switching between different tasks in an autonomous agent, such as a robot or a virtual entity in a computer game. BTs are a very efficient way of creating complex systems that are both modular…
The early development of a zygote can be mathematically described by a developmental tree. To compare developmental trees of different species, we need to define distances on trees. If children cells after a division are not…
We study the possible values of the matching number among all trees with a given degree sequence as well as all bipartite graphs with a given bipartite degree sequence. For tree degree sequences, we obtain closed formulas for the possible…
We investigate the statistics of trees grown from some initial tree by attaching links to preexisting vertices, with attachment probabilities depending only on the valence of these vertices. We consider the asymptotic mass distribution that…
A chief problem in phylogenetics and database theory is the computation of a maximum consistent tree from a set of rooted or unrooted trees. A standard input are triplets, rooted binary trees on three leaves, or quartets, unrooted binary…
One can often make inferences about a growing network from its current state alone. For example, it is generally possible to determine how a network changed over time or pick among plausible mechanisms explaining its growth. In practice,…
The status of a vertex $v$ in a connected graph is the sum of the distances from $v$ to all other vertices. The status sequence of a connected graph is the list of the statuses of all the vertices of the graph. In this paper we investigate…
To a given gene tree topology $G$ and species tree topology $S$ with leaves labeled bijectively from a fixed set $X$, one can associate a set of ancestral configurations, each of which encodes a set of gene lineages that can be found at a…
In this paper we consider the enumeration of binary trees avoiding non-contiguous binary tree patterns. We begin by computing closed formulas for the number of trees avoiding a single binary tree pattern with 4 or fewer leaves and compare…
In a rooted tree, we call a vertex {\em balanced} if it is at equal distance from all its descendant leaves. We count balanced vertices in three different tree varieties. For decreasing binary trees, we can prove that the probability that a…
A new 2-parameter family of central structures in trees, called central forests, is introduced. Minieka's $m$-center problem and McMorris's and Reid's central-$k$-tree can be seen as special cases of central forests in trees. A central…
In this work, we expose four bijections each allowing to increase (or decrease) one parameter in either uniform random forests with a fixed number of edges and trees, or quadrangulations with a boundary having a fixed number of faces and a…
We propose a B tree representation storing $n$ keys, each of $k$ bits, in either (a) $nk + O(nk / \lg n)$ bits or (b) $nk + O(nk \lg \lg n/ \lg n)$ bits of space supporting all B tree operations in either (a) $O(\lg n )$ time or (b) $O(\lg…
Tree rotations (left and right) are basic local deformations allowing to transform between two unlabeled binary trees of the same size. Hence, there is a natural problem of practically finding such transformation path with low number of…
A suffix tree is a data structure used mainly for pattern matching. It is known that the space complexity of simple suffix trees is quadratic in the length of the string. By a slight modification of the simple suffix trees one gets the…
New applications of data mining, such as in biology, bioinformatics, or sociology, are faced with large datasetsstructured as graphs. We introduce a novel class of tree-shapedpatterns called tree queries, and present algorithms for…