Related papers: A bijection for the evolution of $B$-trees
We investigate clique trees of infinite locally finite chordal graphs. Our main contribution is a bijection between the set of clique trees and the product of local finite families of finite trees. Even more, the edges of a clique tree are…
The trie-based radix sort algorithm stores pairwise different infinite binary strings in the leaves of a binary tree in a way that the Ulam-Harris coding of each leaf equals a prefix (that is, an initial segment) of the corresponding…
In analogy to other concepts of a similar nature, we define the inducibility of a rooted binary tree. Given a fixed rooted binary tree $B$ with $k$ leaves, we let $\gamma(B,T)$ be the proportion of all subsets of $k$ leaves in $T$ that…
A Skolem sequence is a linear arrangement of the multiset, {1, 1, 2, 2, ..., n, n} such that if r in [n] appears in positions i and j, then |i-j| = r. We first translate the problem to a particular set of perfect matchings, then apply the…
We propose a statistical method to test whether two phylogenetic trees with given alignments are significantly incongruent. Our method compares the two distributions of phylogenetic trees given by the input alignments, instead of comparing…
A Concept Tree is a structure for storing knowledge where the trees are stored in a database called a Concept Base. It sits between the highly distributed neural architectures and the distributed information systems, with the intention of…
Coalescent histories are combinatorial structures that describe for a given gene tree and species tree the possible lists of branches of the species tree on which the gene tree coalescences take place. Properties of the number of coalescent…
Baxter permutations are known to be in bijection with a wide number of combinatorial objects. Previously, it was shown that each of these objects had a natural involution which was carried equivariantly by the known bijections, and the…
We present three bijections, the first between little Schr\"{o}der paths and a class of growth-constrained integer sequences, the second between lattice paths consisting of steps with nonnegative slope and another class of…
An optimal binary search tree for an access sequence on elements is a static tree that minimizes the total search cost. Constructing perfectly optimal binary search trees is expensive so the most efficient algorithms construct almost…
Latent tree analysis seeks to model the correlations among a set of random variables using a tree of latent variables. It was proposed as an improvement to latent class analysis --- a method widely used in social sciences and medicine to…
Phylogenetic trees are frequently used to model evolution. Such trees are typically reconstructed from data like DNA, RNA, or protein alignments using methods based on criteria like maximum parsimony (amongst others). Maximum parsimony has…
We develop a new bijective framework for the enumeration of bipartite planar maps with control on the degree distribution of black and white vertices. Our approach builds on the blossoming-tree paradigm, introducing a family of orientations…
In this paper two new graph operations are introduced, and with them the S-trees are studied in depth. This allows to find \(\{-1,0,1\}\)-basis for all the fundamental subspaces of the adjacency matrix of any tree, and to understand in…
A central theme in phylogenetics is the reconstruction and analysis of evolutionary trees from a given set of data. To determine the optimal search methods for reconstructing trees, it is crucial to understand the size and structure of the…
We explore new connections between complete non-ambiguous trees (CNATs) and permutations. We give a bijection between tree-like tableaux and a specific subset of CNATs. This map is used to establish and solve a recurrence relation for the…
Let $G = (V,E)$ denote a simple graph with the vertex set $V$ and the edge set $E$. The profile of a vertex set $V'\subseteq V$ denotes the multiset of pairwise distances between the vertices of $V'$. Two disjoint subsets of $V$ are…
In evolutionary biology, networks are becoming increasingly used to represent evolutionary histories for species that have undergone non-treelike or reticulate evolution. Such networks are essentially directed acyclic graphs with a leaf set…
A phylogenetic tree shows the evolutionary relationships among species. Internal nodes of the tree represent speciation events and leaf nodes correspond to species. A goal of phylogenetics is to combine such trees into larger trees, called…
The B-tree is a fundamental secondary index structure that is widely used for answering one-dimensional range reporting queries. Given a set of $N$ keys, a range query can be answered in $O(\log_B \nm + \frac{K}{B})$ I/Os, where $B$ is the…