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Traditional vaccines against viruses are designed to target their surface proteins, i.e., antigens, which can trigger the immune system to produce specific antibodies to capture and neutralize the viruses. However, viruses often evolve…

Populations and Evolution · Quantitative Biology 2020-03-25 Rui Qiao , Ngoc Hieu Tran , Baozhen Shan , Ali Ghodsi , Ming Li

Epidemic risk assessment poses inherent challenges, with traditional approaches often failing to balance health outcomes and economic constraints. This paper presents a data-driven decision support tool that models epidemiological dynamics…

Applications · Statistics 2025-11-24 Chang Zhai , Ping Chen , Zhuo Jin , David Pitt

This paper proposes a novel Extended Particle Swarm Optimization model (EPSO) that potentially enhances the search process of PSO for optimization problem. Evidently, gene expression profiles are significantly important measurement factor…

Neural and Evolutionary Computing · Computer Science 2020-08-11 Ali Hakem Alsaeedi , Adil L. Albukhnefis , Dhiah Al-Shammary , Muntasir Al-Asfoor

Optimizing conflicting molecular properties while strictly adhering to complex 3D structural constraints constitutes a challenging Constrained Multi-Objective Optimization Problem (CMOP). Traditional Evolutionary Algorithms (EAs) destroy…

Neural and Evolutionary Computing · Computer Science 2026-04-09 Ruiqing Sun , Dawei Feng , Sen Yang , Ronghang Wang , Huaiyuan Song , Bo Ding , Yijie Wang , Huaimin Wang

2026 has brought an explosion of interest in LLM-guided evolution of agentic artifacts, with systems like GEPA and Autoresearch demonstrating that LLMs can iteratively improve prompts, code, and agent architectures across diverse domains.…

Artificial Intelligence · Computer Science 2026-04-07 Andrew Borthwick , Stephen Ash , Anthony Galczak

Data-driven evolutionary algorithms usually aim to exploit the information behind a limited amount of data to perform optimization, which have proved to be successful in solving many complex real-world optimization problems. However, most…

Artificial Intelligence · Computer Science 2023-09-06 Qiqi Liu , Yuping Yan , Peter Ligeti , Yaochu Jin

Recent advances in generative models, particularly diffusion and auto-regressive models, have revolutionized fields like computer vision and natural language processing. However, their application to structure-based drug design (SBDD)…

Machine Learning · Computer Science 2025-07-29 Yi He , Ailun Wang , Zhi Wang , Yu Liu , Xingyuan Xu , Wen Yan

This paper proposes the multi objective variant of the recently introduced fitness dependent optimizer (FDO). The algorithm is called a Multi objective Fitness Dependent Optimizer (MOFDO) and is equipped with all five types of knowledge…

Neural and Evolutionary Computing · Computer Science 2023-02-14 Jaza M. Abdullah , Tarik A. Rashid , Bestan B. Maaroof , Seyedali Mirjalili

In this paper we propose a novel methodology to assist in identifying vulnerabilities in a real-world complex heterogeneous industrial control systems (ICS) using two evolutionary multiobjective optimisation (EMO) algorithms, NSGA-II and…

Cryptography and Security · Computer Science 2020-05-28 Nilufer Tuptuk , Stephen Hailes

This research investigates a multi-product, multi-echelon, and multi-period vaccine supply chain network model under uncertainty and quality inspection errors. The objective function seeks optimizing the total cost of the supply chain.…

Optimization and Control · Mathematics 2024-05-07 Bouchenine Abderrahmen , Almaraj Ismail

A new model for evolving Evolutionary Algorithms (EAs) is proposed in this paper. The model is based on the Multi Expression Programming (MEP) technique. Each MEP chromosome encodes an evolutionary pattern that is repeatedly used for…

Neural and Evolutionary Computing · Computer Science 2021-10-13 Mihai Oltean

Traditional methods present a very restrictive range of applications, mainly limited by the features of the function to be optimized and of the constraint functions. In contrast, evolutionary algorithms present almost no restriction to the…

Neural and Evolutionary Computing · Computer Science 2021-01-26 Mauro S. Innocente , Johann Sienz

Parametric multi-objective optimization (PMO) addresses the challenge of solving an infinite family of multi-objective optimization problems, where optimal solutions must adapt to varying parameters. Traditional methods require re-execution…

Neural and Evolutionary Computing · Computer Science 2025-11-11 Ji Cheng , Bo Xue , Qingfu Zhang

The evolutionary diversity optimization aims at finding a diverse set of solutions which satisfy some constraint on their fitness. In the context of multi-objective optimization this constraint can require solutions to be Pareto-optimal. In…

Neural and Evolutionary Computing · Computer Science 2023-07-17 Denis Antipov , Aneta Neumann , Frank Neumann

This paper proposes Evolutionary Multi-objective Optimization (EMO)-based Adversarial Example (AE) design method that performs under black-box setting. Previous gradient-based methods produce AEs by changing all pixels of a target image,…

Computer Vision and Pattern Recognition · Computer Science 2024-07-09 Takahiro Suzuki , Shingo Takeshita , Satoshi Ono

Data-driven evolutionary multi-objective optimization (EMO) has been recognized as an effective approach for multi-objective optimization problems with expensive objective functions. The current research is mainly developed for problems…

Neural and Evolutionary Computing · Computer Science 2022-05-31 Renzhi Chen , Ke Li

It is assumed in the evolutionary multi-objective optimization (EMO) community that a final solution is selected by a decision maker from a non-dominated solution set obtained by an EMO algorithm. The number of solutions to be presented to…

Neural and Evolutionary Computing · Computer Science 2020-12-15 Hisao Ishibuchi , Lie Meng Pang , Ke Shang

Multiobjective evolutionary algorithms (MOEAs) have been successfully applied to a number of constrained optimization problems. Many of them adopt mutation and crossover operators from differential evolution. However, these operators do not…

Neural and Evolutionary Computing · Computer Science 2019-11-11 Wei Huang , Tao Xu , Kangshun Li , Jun He

Bayesian Optimization (BO) is a powerful tool for optimizing expensive black-box objective functions. While extensive research has been conducted on the single-objective optimization problem, the multi-objective optimization problem remains…

Machine Learning · Computer Science 2025-10-27 Lam Ngo , Huong Ha , Jeffrey Chan , Hongyu Zhang

Several models have been developed to predict how the COVID-19 pandemic spreads, and how it could be contained with non-pharmaceutical interventions (NPIs) such as social distancing restrictions and school and business closures. This paper…

Neural and Evolutionary Computing · Computer Science 2020-08-04 Risto Miikkulainen , Olivier Francon , Elliot Meyerson , Xin Qiu , Elisa Canzani , Babak Hodjat