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We present a deep learning segmentation model that can automatically and robustly segment all major anatomical structures in body CT images. In this retrospective study, 1204 CT examinations (from the years 2012, 2016, and 2020) were used…

Background: Segmentation of organs and structures in abdominal MRI is useful for many clinical applications, such as disease diagnosis and radiotherapy. Current approaches have focused on delineating a limited set of abdominal structures…

Image and Video Processing · Electrical Eng. & Systems 2025-08-07 Yan Zhuang , Tejas Sudharshan Mathai , Pritam Mukherjee , Brandon Khoury , Boah Kim , Benjamin Hou , Nusrat Rabbee , Abhinav Suri , Ronald M. Summers

Purpose: To develop and evaluate a deep learning model for multi-organ segmentation of MRI scans. Materials and Methods: The model was trained on 1,200 manually annotated 3D axial MRI scans from the UK Biobank, 221 in-house MRI scans, and…

Objectives: To present a publicly available deep learning-based torso segmentation model that provides comprehensive voxel-wise coverage, including delineations that extend to the boundaries of anatomical compartments. Materials and…

Recent advances in deep learning have led to robust automated tools for segmentation of abdominal computed tomography (CT). Meanwhile, segmentation of magnetic resonance imaging (MRI) is substantially more challenging due to the inherent…

Image and Video Processing · Electrical Eng. & Systems 2025-07-28 Deepa Krishnaswamy , Cosmin Ciausu , Steve Pieper , Ron Kikinis , Benjamin Billot , Andrey Fedorov

The segmentation of multiple organs in multi-parametric MRI studies is critical for many applications in radiology, such as correlating imaging biomarkers with disease status (e.g., cirrhosis, diabetes). Recently, three publicly available…

Computer Vision and Pattern Recognition · Computer Science 2025-04-11 Nicole Tran , Anisa Prasad , Yan Zhuang , Tejas Sudharshan Mathai , Boah Kim , Sydney Lewis , Pritam Mukherjee , Jianfei Liu , Ronald M. Summers

Automated volumetric segmentation of the pancreas on cross-sectional imaging is needed for diagnosis and follow-up of pancreatic diseases. While CT-based pancreatic segmentation is more established, MRI-based segmentation methods are…

Purposes: This study aimed to develop a computed tomography (CT)-based multi-organ segmentation model for delineating organs-at-risk (OARs) in pediatric upper abdominal tumors and evaluate its robustness across multiple datasets. Materials…

The quantity and quality of muscles are increasingly recognized as important predictors of health outcomes. While MRI offers a valuable modality for such assessments, obtaining precise quantitative measurements of musculature remains…

Accurate segmentation of the prostate gland in multiparametric MRI (mpMRI) is a fundamental step for a wide range of clinical and research applications, including image registration, volume estimation, and radiomic analysis. However, manual…

Computer Vision and Pattern Recognition · Computer Science 2026-04-03 Pablo Rodriguez-Belenguer , Gloria Ribas , Javier Aquerreta Escribano , Rafael Moreno-Calatayud , Leonor Cerda-Alberich , Luis Marti-Bonmati

This study addresses the essential task of medical image segmentation, which involves the automatic identification and delineation of anatomical structures and pathological regions in medical images. Accurate segmentation is crucial in…

Computer Vision and Pattern Recognition · Computer Science 2025-07-01 Seyedeh Sahar Taheri Otaghsara , Reza Rahmanzadeh

Most deep learning models in medical imaging are trained on adult data with unclear performance on pediatric images. In this work, we aim to address this challenge in the context of automated anatomy segmentation in whole-body Computed…

Image and Video Processing · Electrical Eng. & Systems 2024-04-23 Chih-Ying Liu , Jeya Maria Jose Valanarasu , Camila Gonzalez , Curtis Langlotz , Andrew Ng , Sergios Gatidis

Computed Tomography (CT) is one of the most popular modalities for medical imaging. By far, CT images have contributed to the largest publicly available datasets for volumetric medical segmentation tasks, covering full-body anatomical…

Image and Video Processing · Electrical Eng. & Systems 2024-11-25 Jin Ye , Ying Chen , Yanjun Li , Haoyu Wang , Zhongying Deng , Ziyan Huang , Yanzhou Su , Chenglong Ma , Yuanfeng Ji , Junjun He

Magnetic Resonance Imaging (MRI) is pivotal in radiology, offering non-invasive and high-quality insights into the human body. Precise segmentation of MRIs into different organs and tissues would be highly beneficial since it would allow…

Background and objective: Combined evaluation of lumbosacral structures (e.g. nerves, bone) on multimodal radiographic images is routinely conducted prior to spinal surgery and interventional procedures. Generally, magnetic resonance…

Computer Vision and Pattern Recognition · Computer Science 2018-11-30 Guoxin Fan , Huaqing Liu , Zhenhua Wu , Yufeng Li , Chaobo Feng , Dongdong Wang , Jie Luo , Xiaofei Guan , William M. Wells , Shisheng He

Tumor segmentation in whole-body PET/CT imaging is crucial for precise disease evaluation and treatment planning. However, it remains challenging due to variability in lesion size, contrast, and anatomical distribution. Relying on manual…

Computer Vision and Pattern Recognition · Computer Science 2026-05-12 Hussain Alasmawi

In recent years, "U-shaped" neural networks featuring encoder and decoder structures have gained popularity in the field of medical image segmentation. Various variants of this model have been developed. Nevertheless, the evaluation of…

Image and Video Processing · Electrical Eng. & Systems 2023-06-02 Qi Ye , Lihua Guo

Deep learning empowers the mainstream medical image segmentation methods. Nevertheless current deep segmentation approaches are not capable of efficiently and effectively adapting and updating the trained models when new incremental…

Computer Vision and Pattern Recognition · Computer Science 2023-09-06 Zhanghexuan Ji , Dazhou Guo , Puyang Wang , Ke Yan , Le Lu , Minfeng Xu , Jingren Zhou , Qifeng Wang , Jia Ge , Mingchen Gao , Xianghua Ye , Dakai Jin

Purpose: Accurate segmentation of both the pituitary gland and adenomas from magnetic resonance imaging (MRI) is essential for diagnosis and treatment of pituitary adenomas. This systematic review evaluates automatic segmentation methods…

Image and Video Processing · Electrical Eng. & Systems 2025-06-25 Mubaraq Yakubu , Navodini Wijethilake , Jonathan Shapey , Andrew King , Alexander Hammers

Deep learning has shown great promise in the ability to automatically annotate organs in magnetic resonance imaging (MRI) scans, for example, of the brain. However, despite advancements in the field, the ability to accurately segment…

Image and Video Processing · Electrical Eng. & Systems 2024-03-26 Cosmin Ciausu , Deepa Krishnaswamy , Benjamin Billot , Steve Pieper , Ron Kikinis , Andrey Fedorov
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