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Snarls and superbubbles are fundamental pangenome decompositions capturing variant sites. These bubble-like structures underpin key tasks in computational pangenomics, including structural-variant genotyping, distance indexing, haplotype…

Data Structures and Algorithms · Computer Science 2025-12-01 Francisco Sena , Aleksandr Politov , Corentin Moumard , Manuel Cáceres , Sebastian Schmidt , Juha Harviainen , Alexandru I. Tomescu

Cosmological $N$-body simulations play a vital role in studying models for the evolution of the Universe. To compare to observations and make a scientific inference, statistic analysis on large simulation datasets, e.g., finding halos,…

Instrumentation and Methods for Astrophysics · Physics 2018-05-07 Nikita Ivkin , Zaoxing Liu , Lin F. Yang , Srinivas Suresh Kumar , Gerard Lemson , Mark Neyrinck , Alexander S. Szalay , Vladimir Braverman , Tamas Budavari

The evolution of substructure embedded in non-dissipative dark halos is studied through N-body simulations of isolated systems, both in and out of initial equilibrium, complementing cosmological simulations of the growth of structure. We…

Astrophysics · Physics 2009-11-07 Bing Zhang , Rosemary F. G. Wyse , Massimo Stiavelli , Joseph Silk

The structural and dynamic properties of the dark matter halos, though an important ingredient in understanding large-scale structure formation, require more conservative particle resolution than those required by halo mass alone in a…

Cosmology and Nongalactic Astrophysics · Physics 2022-11-23 Sujatha Ramakrishnan , Premvijay Velmani

High-dimensional datasets often contain multiple meaningful clusterings in different subspaces. For example, objects can be clustered either by color, weight, or size, revealing different interpretations of the given dataset. A variety of…

Machine Learning · Computer Science 2025-04-08 Collin Leiber , Dominik Mautz , Claudia Plant , Christian Böhm

The Universe at the present epoch is found to be a network of matter over-dense and under-dense regions. To date, this picture of the Universe is best revealed through cosmological large-volume simulations and large-scale galaxy redshift…

Cosmology and Nongalactic Astrophysics · Physics 2023-11-28 Prateek Gupta , Surajit Paul

Context: We present COSTA (COld STream finder Algorithm), a novel algorithm to search for cold kinematical substructures in the phase space of planetary nebulae (PNe) and globular clusters (GCs) in the halo of massive galaxies and…

Astrophysics of Galaxies · Physics 2021-01-04 M. Gatto , N. R. Napolitano , C. Spiniello , G. Longo , M. Paolillo

Hybrid simulation (HS) is a widely used structural testing method that combines a computational substructure with a numerical model for well-understood components and an experimental substructure for other parts of the structure that are…

Machine Learning · Computer Science 2020-04-07 Elif Ecem Bas , Mohamed A. Moustafa , David Feil-Seifer , Janelle Blankenburg

Models for the formation and growth of structure in a cold dark matter dominated universe predict that galaxy halos should contain significant substructure. Studies of the Milky Way, however, have yet to identify the expected few hundred…

Astrophysics · Physics 2009-11-07 R. A. Ibata , G. F. Lewis , M. J. Irwin

Localization and mapping are core perceptual capabilities for underwater robots. Stereo cameras provide a low-cost means of directly estimating metric depth to support these tasks. However, despite recent advances in stereo depth estimation…

Superclusters are the most massive structures in the universe. To what degree they are actually bound against an accelerating expansion of the background is of significant cosmological and astrophysical interest. In this study, we introduce…

Cosmology and Nongalactic Astrophysics · Physics 2025-11-05 B. A. Seidel , K. Dolag , R. -S. Remus , J. G. Sorce , E. Hernández-Martínez , I. Khabibullin , N. Aghanim

We use numerical simulations to examine the substructure within galactic and cluster mass halos that form within a hierarchical universe. Clusters are easily reproduced with a steep mass spectrum of thousands of substructure clumps that…

With the growing advances in deep learning based technologies the detection and identification of co-occurring objects is a challenging task which has many applications in areas such as, security and surveillance. In this paper, we propose…

Computer Vision and Pattern Recognition · Computer Science 2024-07-26 Binay Kumar Singh , Niels Da Vitoria Lobo

The hierarchical mergers that form the haloes of dark matter surrounding galaxies, groups and clusters are not entirely efficient, leaving substantial amounts of dense substructure, in the form of stripped halo cores or `subhaloes',…

Astrophysics · Physics 2009-11-07 James E. Taylor , Arif Babul

Functional groups and moieties are chemical descriptors of biomolecules that can be used to interpret their properties and functions, leading to the understanding of chemical or biological mechanisms. These chemical building blocks, or…

Biomolecules · Quantitative Biology 2021-11-08 Yasemin Yesiltepe , Ryan S. Renslow , Thomas O. Metz

The goal of this paper is to develop a machine learning model to analyze the main gravitational lens and detect dark substructure (subhalos) within simulated images of strongly lensed galaxies. Using the technique of image segmentation, we…

Cosmology and Nongalactic Astrophysics · Physics 2022-01-27 Bryan Ostdiek , Ana Diaz Rivero , Cora Dvorkin

We present a study of a comparison of spin distributions of subhaloes found associated with a host halo. The subhaloes are found within two cosmological simulation families of Milky Way-like galaxies, namely the Aquarius and GHALO…

Purpose: To improve reconstruction fidelity of fine structures and textures in deep learning (DL) based reconstructions. Methods: A novel patch-based Unsupervised Feature Loss (UFLoss) is proposed and incorporated into the training of…

Image and Video Processing · Electrical Eng. & Systems 2021-08-31 Ke Wang , Jonathan I Tamir , Alfredo De Goyeneche , Uri Wollner , Rafi Brada , Stella Yu , Michael Lustig

Climate models are essential to understand and project climate change, yet long-standing biases and uncertainties in their projections remain. This is largely associated with the representation of subgrid-scale processes, particularly…

We develop the Blooming Tree Algorithm, a new technique that uses spectroscopic redshift data alone to identify the substructures and the surrounding groups of galaxy clusters, along with their member galaxies. Based on the estimated…

Astrophysics of Galaxies · Physics 2018-06-21 Heng Yu , Antonaldo Diaferio , Ana Laura Serra , Marco Baldi