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How do we capture the breadth of behavior in animal movement, from rapid body twitches to aging? Using high-resolution videos of the nematode worm $C. elegans$, we show that a single dynamics connects posture-scale fluctuations with…

Biological Physics · Physics 2024-09-02 Antonio C. Costa , Tosif Ahamed , David Jordan , Greg J. Stephens

Behaviors of several laboratory animals can be modeled as sequences of stereotyped behaviors, or behavioral motifs. However, identifying such motifs is a challenging problem. Behaviors have a multi-scale structure: the animal can be…

Quantitative Methods · Quantitative Biology 2021-05-12 Haozhe Shan , Peggy Mason

Bacteria possess diverse mechanisms to regulate their motility in response to environmental and physiological signals, enabling them to navigate complex habitats and adapt their behavior. Among these mechanisms, interspecies recognition…

Populations and Evolution · Quantitative Biology 2025-12-01 Mattia Mattei , David Soriano Paños , Mahantesh Halappanavar , Alex Arenas

Microorganisms live in inherently dynamic environments where fluctuations in biotic and abiotic factors shape their behaviour, physiology, and fitness. The concept of ecological memory: the lasting imprint of prior environmental cues,…

Biological Physics · Physics 2026-03-02 Narges Kakavand , Anupam Sengupta

Recent developments in automated tracking allow uninterrupted, high-resolution recording of animal trajectories, sometimes coupled with the identification of stereotyped changes of body pose or other behaviors of interest. Analysis and…

Populations and Evolution · Quantitative Biology 2018-07-04 Katarina Bodova , Gabriel J. Mitchell , Roy Harpaz , Elad Schneidman , Gasper Tkacik

Collective motion provides a spectacular example of self-organization in Nature. Visual information plays a crucial role among various types of information in determining interactions. Recently, experiments have revealed that organisms such…

Adaptation and Self-Organizing Systems · Physics 2024-07-26 Susumu Ito , Nariya Uchida

Trajectories from a pair of interacting zebrafish are used to test for the existence of anticipatory dynamics in natural systems. Anticipatory dynamics (AD) is unusual in that causal events are not necessarily ordered by their temporal…

Biological Physics · Physics 2022-01-03 Chun-Jen Chen , Chi-An Lin , Heng Hsu , José Jiun-Shian Wu , Yu-Ting Huang , C. K. Chan

Macrophages play an essential role in wound healing due to their dynamic nature and functional plasticity, exhibiting highly heterogeneous morpho-kinetic behaviors depending on their activation states. However, quantitative analysis of…

Quantitative Methods · Quantitative Biology 2025-07-28 Seol Ah Park , Giulia Lupi , Resul Ozbilgic , Michal Kollar , Aneta A. Ozvat , Mai Nguyen-Chi , Karol Mikula

Risk perception plays a key role in shaping the collective behavior of moving animal groups, yet the effects of variation in perceived risk within groups is unknown. Here, we merge two subgroups of fish with different levels of perceived…

Living systems such as neuronal networks and animal groups process information about their environment via the dynamics of interacting units. These can transition between distinct macroscopic behaviors. Near such a transition (or critical…

Social foraging is a widespread form of animal foraging in which groups of individuals coordinate their decisions to exploit resources in the environment. Animals show a variety of social structures from egalitarian to hierarchical. In this…

Populations and Evolution · Quantitative Biology 2025-03-05 Lisa Blum Moyse , Ahmed El Hady

Vertical migrations of zooplankters have been widely described, but their active movements through shallow, highly dynamic water columns within the inner shelf may be more complex and difficult to characterize. In this study, invertebrate…

Quantitative Methods · Quantitative Biology 2024-01-22 Nicolas Weidberg , Wayne Goschen , Jennifer M. Jackson , Paula Pattrick , Christopher D. McQuaid , Francesca Porri

Animals employ different strategies for relating sensory input to behavioral output to navigate sensory environments, but what strategy to use, when to switch and why remain unclear. In C. elegans, navigation is composed of 'steering' and…

Neurons and Cognition · Quantitative Biology 2025-08-04 Kevin S. Chen , Andrew M. Leifer , Jonathan W. Pillow

Epileptic seizures are characterised by abnormal brain dynamics at multiple scales, engaging single neurons, neuronal ensembles and coarse brain regions. Key to understanding the cause of such emergent population dynamics, is capturing the…

Neurons and Cognition · Quantitative Biology 2022-12-13 Dominic RW Burrows

Characterization of multivariate time series of behaviour data from animal-borne sensors is challenging. Biologists require methods to objectively quantify baseline behaviour, then assess behaviour changes in response to environmental…

Animals use a combination of egocentric navigation driven by the internal integration of environmental cues, interspersed with geocentric course correction and reorientation, often with uncertainty in sensory acquisition of information,…

Biological Physics · Physics 2015-12-22 O. Peleg , L. Mahadevan

Drawing inspiration from animal navigation strategies, we introduce a novel computational model for navigation and mapping, rooted in biologically inspired principles. Animals exhibit remarkable navigation abilities by efficiently using…

Artificial Intelligence · Computer Science 2025-01-07 Daria de Tinguy , Tim Verbelen , Bart Dhoedt

In this work, we demonstrate that key aspects of the dynamical behavior of coral reefs at the macro scale, which evolve over time scales of centuries, can be accurately described using a model that integrates a few fundamental ecological…

Populations and Evolution · Quantitative Biology 2025-01-20 Miguel Álvarez-Alegría , Pablo Moreno-Spiegelberg , Manuel A. Matías , Damià Gomila

Navigation of microorganisms is controlled by internal processes ultimately sensitive to mechanical or chemical signaling encountered along the path. In many natural environments, such as porous soils or physiological ducts, motile species…

Current theories suggest that adaptive decision-making necessitates the interaction between multiple decision-making systems. The computational definitions of different models of decision-making suggest interactions with task demands and…

Neurons and Cognition · Quantitative Biology 2023-07-28 Ugurcan Mugan , Seiichiro Amemiya , Paul S. Regier , A. David Redish