English

A Markovian dynamics for C. elegans behavior across scales

Biological Physics 2024-09-02 v2 Chaotic Dynamics Neurons and Cognition

Abstract

How do we capture the breadth of behavior in animal movement, from rapid body twitches to aging? Using high-resolution videos of the nematode worm C.elegansC. elegans, we show that a single dynamics connects posture-scale fluctuations with trajectory diffusion, and longer-lived behavioral states. We take short posture sequences as an instantaneous behavioral measure, fixing the sequence length for maximal prediction. Within the space of posture sequences we construct a fine-scale, maximum entropy partition so that transitions among microstates define a high-fidelity Markov model, which we also use as a means of principled coarse-graining. We translate these dynamics into movement using resistive force theory, capturing the statistical properties of foraging trajectories. Predictive across scales, we leverage the longest-lived eigenvectors of the inferred Markov chain to perform a top-down subdivision of the worm's foraging behavior, revealing both "runs-and-pirouettes" as well as previously uncharacterized finer-scale behaviors. We use our model to investigate the relevance of these fine-scale behaviors for foraging success, recovering a trade-off between local and global search strategies.

Keywords

Cite

@article{arxiv.2310.12883,
  title  = {A Markovian dynamics for C. elegans behavior across scales},
  author = {Antonio C. Costa and Tosif Ahamed and David Jordan and Greg J. Stephens},
  journal= {arXiv preprint arXiv:2310.12883},
  year   = {2024}
}

Comments

28 pages, 15 figures

R2 v1 2026-06-28T12:55:49.064Z