Related papers: CMOSS: A Reliable, Motif-based Columnar Molecular …
Proper quality control (QC) is time consuming when working with large-scale medical imaging datasets, yet necessary, as poor-quality data can lead to erroneous conclusions or poorly trained machine learning models. Most efforts to reduce…
DNA is not only the genetic material of life, but also a favorable material for a new computing model. Various research works based on DNA computing have been carried out in recent years. DNA sequence design is the foundation of such…
Synthetic DNA approaches 227.5 exabytes per gram of storage density with stability over millennial timescales. Realising this capacity requires error-correction codes that recover data from substantial synthesis and sequencing errors.…
High-dimensional classification has become an increasingly important problem. In this paper we propose a "Multivariate Adaptive Stochastic Search" (MASS) approach which first reduces the dimension of the data space and then applies a…
The advancements in data acquisition, storage, and processing techniques have resulted in the rapid growth of heterogeneous medical data. Integrating radiological scans, histopathology images, and molecular information with clinical data is…
Motif finding in DNA, RNA and proteins plays an important role in life science research. Recent patents concerning motif finding in the biomolecular data are recorded in the DNA Patent Database which serves as a resource for policy makers…
For the past four decades, cost and features have driven CMOS scaling. Severe lithography and material limitations seen below the 20 nm node, however, are challenging the fundamental premise of affordable CMOS scaling. Just continuing to…
Ever since the Dennard scaling broke down in the early 2000s and the frequency of the CPUs stalled, vendors have started to increase the core count in each CPU chip at the expense of introducing heterogeneity, thus ushering the era of NUMA…
In modern age, the increasing complexity of computation and communication technology is leading us towards the necessity of new paradigm. As a result, unconventional approach like DNA coding theory is gaining considerable attention. The…
Coded caching provides significant gains over conventional uncoded caching by creating multicasting opportunities among distinct requests. Massive multiple-input multiple-output (MIMO) systems require downlink channel state information…
In [1], the authors proposed a new model of DNA storage system that integrates all three steps of retrieval and introduced the concept of DNA-correcting codes, which guarantees that the output of the storage system can be decoded to the…
In the past several years, the problem of genome assembly has received considerable attention from both biologists and computer scientists. An important component of current assembly methods is the scaffolding process. This process involves…
This paper presents an enhanced design of multi-dimensional (MD) constellations which play a pivotal role in many communication systems such as code-domain non-orthogonal multiple access (CD-NOMA). MD constellations are attractive as their…
In this paper, we show that coding can be used in storage area networks (SANs) to improve various quality of service metrics under normal SAN operating conditions, without requiring additional storage space. For our analysis, we develop a…
This study proposes a novel storage engine, SynchroStore, designed to address the inefficiency of update operations in columnar storage systems based on Log-Structured Merge Trees (LSM-Trees) under hybrid workload scenarios. While columnar…
Recently, non-orthogonal multiple access (NOMA) has been proposed to achieve higher spectral efficiency over conventional orthogonal multiple access. Although it has the potential to meet increasing demands of video services, it is still…
Motivated by the recently demonstrated ability to attach quantum dots to polymers at well defined locations, we propose a condensed phase analog of the ion trap quantum computer: a scheme for quantum computation using chemically assembled…
Automated colonic polyp segmentation is crucial for assisting doctors in screening of precancerous polyps and diagnosis of colorectal neoplasms. Although existing methods have achieved promising results, polyp segmentation remains hindered…
We consider error-correcting coding for DNA-based storage. We model the DNA storage channel as a multi-draw IDS channel where the input data is chunked into $M$ short DNA strands, which are copied a random number of times, and the channel…
Biological data mainly comprises of Deoxyribonucleic acid (DNA) and protein sequences. These are the biomolecules which are present in all cells of human beings. Due to the self-replicating property of DNA, it is a key constitute of genetic…