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The statistical mechanics of flexible surfaces with internal elasticity and shape fluctuations is summarized. Phantom and self-avoiding isotropic and anisotropic membranes are discussed, with emphasis on the universal negative Poisson ratio…

Soft Condensed Matter · Physics 2016-11-23 Mark J. Bowick

The transport of nanoparticles (NPs) in polymer networks, as a typical simplified model describing various structures in living systems, is profoundly important in biomedical engineering and nanotechnology. Predicting the effective…

Chemical Physics · Physics 2022-10-12 Yu Lu , Xin-Yue Liu , Guo-Hui Hu

We probe flows of soft, viscous spheres near the jamming point, which acts as a critical point for static soft spheres. Starting from energy considerations, we find nontrivial scaling of velocity fluctuations with strain rate. Combining…

Soft Condensed Matter · Physics 2015-03-13 Brian P. Tighe , Erik Woldhuis , Joris J. C. Remmers , Wim van Saarloos , Martin van Hecke

We introduce novel sets of measures with the goal of describing dynamical properties of force networks in dense particulate systems. The presented approach is based on persistent homology and allows for extracting precise, quantitative…

Data Analysis, Statistics and Probability · Physics 2015-06-19 Miroslav Kramar , Arnaud Goullet , Lou Kondic , Konstantin Mischaikow

In thermally fluctuating long linear polymeric chain in solution, the ends come from time to time into a direct contact or a close vicinity of each other. At such an instance, the chain can be regarded as a closed one and thus will form a…

Biological Physics · Physics 2007-05-23 Akos Dobay , Pierre-Edouard Sottas , Jacques Dubochet , Andrzej Stasiak

Networks of semiflexible or stiff polymers such as most biopolymers are known to deform inhomogeneously when sheared. The effects of such non-affine deformation have been shown to be much stronger than for flexible polymers. To date, our…

Soft Condensed Matter · Physics 2023-03-08 Sihan Chen , Tomer Markovich , Fred C. MacKintosh

We provide a unified theory for the high force elasticity of biopolymers solely in terms of the persistence length, $\xi_p$, and the monomer spacing, $a$. When the force $f>\fh \sim k_BT\xi_p/a^2$ the biopolymers behave as Freely Jointed…

Statistical Mechanics · Physics 2015-05-14 Ngo Minh Toan , D. Thirumalai

Latent Euclidean embedding models a given network by representing each node in a Euclidean space, where the probability of two nodes sharing an edge is a function of the distances between the nodes. This implies that for two nodes to share…

Social and Information Networks · Computer Science 2019-09-19 Clifford Anderson-Bergman , Phan Nguyen , Jose Cadena Pico

Parametric estimation for diffusion processes is considered for high frequency observations over a fixed time interval. The processes solve stochastic differential equations with an unknown parameter in the diffusion coefficient. We find…

Methodology · Statistics 2017-04-03 Nina Munkholt Jakobsen , Michael Sørensen

We study the $1+1$-dimensional random directed polymer problem, i.e., an elastic string $\phi(x)$ subject to a Gaussian random potential $V(\phi,x)$ and confined within a plane. We mainly concentrate on the short-scale and…

Disordered Systems and Neural Networks · Physics 2015-05-19 V. S. Dotsenko , V. B. Geshkenbein , D. A. Gorokhov , G. Blatter

This study presents a Eulerian theory to elucidate the molecular kinematics in polymer networks and their connection to continuum deformation, grounded in fundamental statistical physics and thermodynamics. Three key innovations are…

Soft Condensed Matter · Physics 2025-07-16 Siyu Wang , Heng Xiao , Lin Zhan

The relaxation of an elastic network, constructed by a contact map of a fractal (crumpled) polymer globule is investigated. We found that: i) the slowest mode of the network is separated from the rest of the spectrum by a wide gap, and ii)…

Statistical Mechanics · Physics 2015-06-15 V. A. Avetisov , V. A. Ivanov , D. A. Meshkov , S. K. Nechaev

When films of Pi-conjugated polymers are optically excited above a certain threshold intensity, then the emission spectrum acquires a multimode finely structured shape, which depends on the position of the excitation spot. We demonstrate…

Mesoscale and Nanoscale Physics · Physics 2007-05-23 R. C. Polson , M. E. Raikh , Z. V. Vardeny

We propose a new network architecture, the Fractal Pyramid Networks (PFNs) for pixel-wise prediction tasks as an alternative to the widely used encoder-decoder structure. In the encoder-decoder structure, the input is processed by an…

Computer Vision and Pattern Recognition · Computer Science 2021-06-29 Zhiqiang Deng , Huimin Yu , Yangqi Long

Understanding looping probabilities, including the particular case of ring-closure or cyclization, of fluctuating polymers (eg DNA) is important in many applications in molecular biology and chemistry. In a continuum limit the configuration…

Statistical Mechanics · Physics 2021-12-14 Giulio Corazza , Raushan Singh

We show that the collapsed globular phase of a polymer accommodates a scale-free incompatibility graph of its contacts. The degree distribution of this network is found to decay with the exponent $\gamma = 1/(2-c)$ up to a cut-off degree…

Statistical Mechanics · Physics 2009-11-10 A. Kabakcioglu , A. L. Stella

Neural network models generally involve two important components, i.e., network architecture and neuron model. Although there are abundant studies about network architectures, only a few neuron models have been developed, such as the MP…

Machine Learning · Computer Science 2022-10-21 Jin-Hui Wu , Shao-Qun Zhang , Yuan Jiang , Zhi-Hua Zhou

We build an effective field theory (EFT) for quasicrystals -- aperiodic incommensurate lattice structures -- at finite temperature, entirely based on symmetry arguments and a well-define action principle. By means of Schwinger-Keldysh…

High Energy Physics - Theory · Physics 2020-11-04 Matteo Baggioli , Michael Landry

Phase separation within polymer networks plays a central role in shaping the structure and mechanics of both synthetic materials and living cells, including the formation of biomolecular condensates within cytoskeletal networks. Previous…

Soft Condensed Matter · Physics 2025-12-01 Takahiro Yokoyama , Yicheng Qiang , David Zwicker , Arash Nikoubashman

Magnetic reconnection can power spectacular high-energy astrophysical phenomena by producing non-thermal energy distributions in highly magnetized regions around compact objects. By means of two-dimensional fully kinetic particle-in-cell…

High Energy Astrophysical Phenomena · Physics 2025-08-28 Sebastiaan Selvi , Oliver Porth , Bart Ripperda , Fabio Bacchini , Lorenzo Sironi , Rony Keppens