English

Theory of biopolymer stretching at high forces

Statistical Mechanics 2015-05-14 v1 Soft Condensed Matter

Abstract

We provide a unified theory for the high force elasticity of biopolymers solely in terms of the persistence length, ξp\xi_p, and the monomer spacing, aa. When the force f>\fhkBTξp/a2f>\fh \sim k_BT\xi_p/a^2 the biopolymers behave as Freely Jointed Chains (FJCs) while in the range \flkBT/ξp<f<\fh\fl \sim k_BT/\xi_p < f < \fh the Worm-like Chain (WLC) is a better model. We show that ξp\xi_p can be estimated from the force extension curve (FEC) at the extension x1/2x\approx 1/2 (normalized by the contour length of the biopolymer). After validating the theory using simulations, we provide a quantitative analysis of the FECs for a diverse set of biopolymers (dsDNA, ssRNA, ssDNA, polysaccharides, and unstructured PEVK domain of titin) for x1/2x \ge 1/2. The success of a specific polymer model (FJC or WLC) to describe the FEC of a given biopolymer is naturally explained by the theory. Only by probing the response of biopolymers over a wide range of forces can the ff-dependent elasticity be fully described.

Keywords

Cite

@article{arxiv.0909.1831,
  title  = {Theory of biopolymer stretching at high forces},
  author = {Ngo Minh Toan and D. Thirumalai},
  journal= {arXiv preprint arXiv:0909.1831},
  year   = {2015}
}

Comments

20 pages, 4 figures