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The multi-wavelength anomalous diffraction (MAD) method is used to determine phase information in x-ray crystallography by employing dispersion corrections from heavy atoms on coherent x-ray scattering. X-ray free-electron lasers (FELs)…

Atomic Physics · Physics 2011-11-18 Sang-Kil Son , Henry N. Chapman , Robin Santra

In the field of transmission electron microscopy, data interpretation often lags behind acquisition methods, as image processing methods often have to be manually tailored to individual datasets. Machine learning offers a promising approach…

Image and Video Processing · Electrical Eng. & Systems 2021-07-07 C. K. Groschner , Christina Choi , M. C. Scott

Since many real-world data can be described from multiple views, multi-view learning has attracted considerable attention. Various methods have been proposed and successfully applied to multi-view learning, typically based on matrix…

Machine Learning · Computer Science 2020-12-03 Haonan Huang , Naiyao Liang , Wei Yan , Zuyuan Yang , Weijun Sun

We present Frequency Marching, FM, an algorithm that refines three-dimensional electron density distributions from solution X-ray scattering data in both the small- and wide-angle regimes. This algorithm is based on a series of optimization…

Biological Physics · Physics 2020-12-25 Yen-Lin Chen , Lois Pollack

Lensless on-chip microscopy has shown great potential for biomedical imaging due to its large-area and high-throughput imaging capabilities. By combining the pixel super-resolution (PSR) technique, it can improve the resolution beyond the…

Image and Video Processing · Electrical Eng. & Systems 2024-09-06 Xuyang Chang , Shaowei Jiang , Yongcun Hu , Liheng Bian

The spectral numerical mode-matching (SNMM) method is developed to simulate the 3D layered multi-region structures. The SNMM method is a semi-analytical solver having the properties of dimensionality reduction to reduce computational costs;…

Optics · Physics 2019-07-10 Jie Liu , Na Liu , Qing Huo Liu

Nuclear Magnetic Resonance (NMR) spectroscopy is an efficient technique to analyze chemical mixtures in which one acquires spectra of the chemical mixtures along one ore more dimensions. One of the important issues is to efficiently analyze…

Medical Physics · Physics 2020-11-03 Afef Cherni , Sandrine Anthoine , Caroline Chaux

Spectroscopic ptychography is a powerful technique to determine the chemical composition of a sample with high spatial resolution. In spectro-ptychography, a sample is rastered through a focused x-ray beam with varying photon energy so that…

Image and Video Processing · Electrical Eng. & Systems 2020-07-21 Huibin Chang , Ziqin Rong , Pablo Enfedaque , Stefano Marchesini

Hyperspectral unmixing is an important remote sensing task with applications including material identification and analysis. Characteristic spectral features make many pure materials identifiable from their visible-to-infrared spectra, but…

Computer Vision and Pattern Recognition · Computer Science 2020-07-14 John Janiczek , Parth Thaker , Gautam Dasarathy , Christopher S. Edwards , Philip Christensen , Suren Jayasuriya

Nonnegative matrix factorization (NMF) under the separability assumption can provably be solved efficiently, even in the presence of noise, and has been shown to be a powerful technique in document classification and hyperspectral unmixing.…

Machine Learning · Statistics 2015-04-02 Nicolas Gillis , Stephen A. Vavasis

Matrix factorization methods are linear models, with limited capability to model complex relations. In our work, we use tropical semiring to introduce non-linearity into matrix factorization models. We propose a method called Sparse…

Machine Learning · Computer Science 2021-04-20 Amra Omanović , Hilal Kazan , Polona Oblak , Tomaž Curk

Bayesian Non-negative Matrix Factorization (NMF) is a promising approach for understanding uncertainty and structure in matrix data. However, a large volume of applied work optimizes traditional non-Bayesian NMF objectives that fail to…

Machine Learning · Statistics 2018-03-19 M. Arjumand Masood , Finale Doshi-Velez

In biological microscopy, light scattering represents the main limitation to image at depth. Recently, a set of wavefront shaping techniques has been developed in order to manipulate coherent light in strongly disordered materials. The…

Optics · Physics 2021-01-07 Antoine Boniface , Jonathan Dong , Sylvain Gigan

Scanning Kelvin probe microscopy (SKPM) is a powerful technique for investigating the electrostatic properties of material surfaces, enabling the imaging of variations in work function, topology, surface charge density, or combinations…

Applied Physics · Physics 2024-07-26 Isaac C. D. Lenton , Felix Pertl , Lubuna Shafeek , Scott R. Waitukaitis

Three-dimensional phase contrast imaging of multiply-scattering samples in X-ray and electron microscopy is extremely challenging, due to small numerical apertures, the unavailability of wavefront shaping optics, and the highly nonlinear…

Computational Physics · Physics 2021-06-02 Philipp M Pelz , Hamish G Brown , Jim Ciston , Scott D Findlay , Yaqian Zhang , Mary Scott , Colin Ophus

[Abridged] An increasing number of astronomical instruments (on Earth and space-based) provide hyperspectral images, that is three-dimensional data cubes with two spatial dimensions and one spectral dimension. The intrinsic limitation in…

Instrumentation and Methods for Astrophysics · Physics 2021-03-17 Axel Boulais , Olivier Berné , Guillaume Faury , Yannick Deville

In this work, we have investigated a number of unsupervised learning methods for material segmentation in projection x-ray imaging with a spectral detector. A phantom containing two hard materials (glass, steel) and three soft materials…

Classification and topic modeling are popular techniques in machine learning that extract information from large-scale datasets. By incorporating a priori information such as labels or important features, methods have been developed to…

Machine Learning · Computer Science 2022-02-01 Pengyu Li , Christine Tseng , Yaxuan Zheng , Joyce A. Chew , Longxiu Huang , Benjamin Jarman , Deanna Needell

Nonnegative matrix factorization (NMF) is a linear dimensionality technique for nonnegative data with applications such as image analysis, text mining, audio source separation and hyperspectral unmixing. Given a data matrix $M$ and a…

Machine Learning · Computer Science 2021-04-14 Junjun Pan , Nicolas Gillis

Electron backscatter diffraction (EBSD) has developed over the last few decades into a valuable crystallographic characterisation method for a wide range of sample types. Despite these advances, issues such as the complexity of sample…

Image and Video Processing · Electrical Eng. & Systems 2024-07-17 Zoë Broad , Alex W. Robinson , Jack Wells , Daniel Nicholls , Amirafshar Moshtaghpour , Angus I. Kirkland , Nigel D. Browning