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A primary challenge in metagenomics is reconstructing individual microbial genomes from the mixture of short fragments created by sequencing. Recent work leverages the sparsity of the assembly graph to find $r$-dominating sets which enable…

Data Structures and Algorithms · Computer Science 2023-01-24 Yosuke Mizutani , Annie Staker , Blair D. Sullivan

A vertex-subset graph problem Q defines which subsets of the vertices of an input graph are feasible solutions. A reconfiguration variant of a vertex-subset problem asks, given two feasible solutions S and T of size k, whether it is…

Computational Complexity · Computer Science 2015-02-18 Daniel Lokshtanov , Amer E. Mouawad , Fahad Panolan , M. S. Ramanujan , Saket Saurabh

The s-club cluster vertex deletion number of a graph, or sccvd, is the minimum number of vertices whose deletion results in a disjoint union of s-clubs, or graphs whose diameter is bounded above by s. We launch a study of several domination…

Computational Complexity · Computer Science 2024-08-19 Faisal N. Abu-Khzam , Lucas Isenmann

The power dominating set (PDS) problem is the following extension of the well-known dominating set problem: find a smallest-size set of nodes $S$ that power dominates all the nodes, where a node $v$ is power dominated if (1) $v$ is in $S$…

Computational Complexity · Computer Science 2007-10-12 Ashkan Aazami , Michael D. Stilp

A {\em dominating set} of a graph $G=(V,E)$ is a subset of vertices $S\subseteq V$ such that every vertex $v\in V\setminus S$ has at least one neighbor in $S$. Finding a dominating set with the minimum cardinality in a connected graph…

Discrete Mathematics · Computer Science 2022-11-23 Frank Hernandez , Ernesto Parra , Jose Maria Sigarreta , Nodari Vakhania

A semitotal dominating set of a graph $G$ with no isolated vertex is a dominating set $D$ of $G$ such that every vertex in $D$ is within distance two of another vertex in $D$. The minimum size $\gamma_{t2}(G)$ of a semitotal dominating set…

Computational Complexity · Computer Science 2018-10-17 Esther Galby , Andrea Munaro , Bernard Ries

It is known that problems like Vertex Cover, Feedback Vertex Set and Odd Cycle Transversal are polynomial time solvable in the class of chordal graphs. We consider these problems in a graph that has at most $k$ vertices whose deletion…

Data Structures and Algorithms · Computer Science 2020-02-25 Ashwin Jacob , Fahad Panolan , Venkatesh Raman , Vibha Sahlot

We study a family of generalizations of Edge Dominating Set on directed graphs called Directed $(p,q)$-Edge Dominating Set. In this problem an arc $(u,v)$ is said to dominate itself, as well as all arcs which are at distance at most $q$…

Computational Complexity · Computer Science 2023-06-22 Rémy Belmonte , Tesshu Hanaka , Ioannis Katsikarelis , Eun Jung Kim , Michael Lampis

A subset $S$ of vertices of $G$ is a \textit{dominating set} of $G$ if every vertex in $V(G)-S$ has a neighbor in $S$. The \textit{domination number} \(\gamma(G)\) is the minimum cardinality of a dominating set of $G$. A dominating set $S$…

Combinatorics · Mathematics 2025-09-26 Yuhan Ma

We address the problem of computing a Minimal Dominating Set in highly dynamic distributed systems. We assume weak connectivity, i.e., the network may be disconnected at each time instant and topological changes are unpredictable. We make…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-02-03 Swan Dubois , Mohamed-Hamza Kaaouachi , Franck Petit

There is substantial literature dealing with fixed parameter algorithms for the dominating set problem on various families of graphs. In this paper, we give a $k^{O(dk)} n$ time algorithm for finding a dominating set of size at most $k$ in…

Data Structures and Algorithms · Computer Science 2008-12-18 Noga Alon , Shai Gutner

Given a graph $G=(V,E)$, the dominating set problem asks for a minimum subset of vertices $D\subseteq V$ such that every vertex $u\in V\setminus D$ is adjacent to at least one vertex $v\in D$. That is, the set $D$ satisfies the condition…

Computational Geometry · Computer Science 2019-11-26 Sandip Banerjee , Sujoy Bhore

The dominating set problem (DSP) is one of the most famous problems in combinatorial optimization. It is defined as follows. For a given simple graph $G=(V,E)$, a dominating set of $G$ is a subset $S\subseteq V$ such that every vertex in $…

Combinatorics · Mathematics 2022-11-01 Nima Ghanbari , Gerold Jäger , Tuomo Lehtilä

Domination is the fastest-growing field within graph theory with a profound diversity and impact in real-world applications, such as the recent breakthrough approach that identifies optimized subsets of proteins enriched with cancer-related…

Physics and Society · Physics 2016-01-08 Jose C. Nacher , Tomoshiro Ochiai

Let $G$ be a graph with vertex set $V$, and let $k$ be a positive integer. A set $D \subseteq V$ is a \emph{distance-$k$ dominating set} of $G$ if, for each vertex $u \in V-D$, there exists a vertex $w\in D$ such that $d(u,w) \le k$, where…

Combinatorics · Mathematics 2022-06-30 Cong X. Kang , Eunjeong Yi

A set $D$ of vertices of a graph is a \emph{defensive alliance} if, for each element of $D$, the majority of its neighbours are in $D$. We consider the notion of local minimality in this paper. We are interested in finding a locally minimal…

Data Structures and Algorithms · Computer Science 2023-03-05 Ajinkya Gaikwad , Soumen Maity , Saket Saurabh

In a reconfiguration version of an optimization problem $\mathcal{Q}$ the input is an instance of $\mathcal{Q}$ and two feasible solutions $S$ and $T$. The objective is to determine whether there exists a step-by-step transformation between…

Data Structures and Algorithms · Computer Science 2019-10-03 Daniel Lokshtanov , Amer E. Mouawad , Fahad Panolan , Sebastian Siebertz

Given a graph $G$ and an integer $k$, Max Min FVS asks whether there exists a minimal set of vertices of size at least $k$ whose deletion destroys all cycles. We present several results that improve upon the state of the art of the…

Data Structures and Algorithms · Computer Science 2025-03-24 Michael Lampis , Nikolaos Melissinos , Manolis Vasilakis

A dominating set $S$ of graph $G$ is called an $r$-grouped dominating set if $S$ can be partitioned into $S_1,S_2,\ldots,S_k$ such that the size of each unit $S_i$ is $r$ and the subgraph of $G$ induced by $S_i$ is connected. The concept of…

Data Structures and Algorithms · Computer Science 2023-02-15 Tesshu Hanaka , Hirotaka Ono , Yota Otachi , Saeki Uda

Let $G=(V, E)$ be a simple and undirected graph. For some integer $k\geq 1$, a set $D\subseteq V$ is said to be a k-dominating set in $G$ if every vertex $v$ of $G$ outside $D$ has at least $k$ neighbors in $D$. Furthermore, for some real…

Computational Complexity · Computer Science 2017-02-03 Davood Bakhshesh , Mohammad Farshi , Mahdieh Hasheminezhad