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Living organisms rely on molecular networks, such as gene circuits and signaling pathways, for information processing and robust decision-making in crowded, noisy environments. Recent advances show that interacting biomolecules…

Many systems in nature and the synthetic world involve ordered arrangements of units on two-dimensional surfaces. We review here the fundamental role payed by both the topology of the underlying surface and its detailed curvature. Topology…

Soft Condensed Matter · Physics 2009-07-31 Mark J. Bowick , Luca Giomi

Neuronal function requires precise spatial organization of mitochondria to meet localized energetic demand. However, the physical constraints governing mitochondrial transport in axons remain poorly defined. Bidirectional motor-driven…

Biological Physics · Physics 2026-04-27 Patrick S. Noerr , Ahmed A. Abushawish , Gulcin Pekkurnaz , Padmini Rangamani

Complex geometric tasks such as geometric modeling, physical simulation, and texture parametrization often involve the embedding of many complex sub-domains with potentially different dimensions. These tasks often require evolving the…

Graphics · Computer Science 2025-01-03 Michael Tao , Jiacheng Dai , Denis Zorin , Teseo Schneider , Daniele Panozzo

Strategies to protect multi-qubit states against decoherence are difficult to formulate because of their complex many-body dynamics. A better knowledge of the decay dynamics would help in the construction of decoupling control schemes. Here…

Quantum Physics · Physics 2015-11-25 Gurneet Kaur , Ashok Ajoy , Paola Cappellaro

Topological defects play a critical role across many fields, mediating phase transitions and macroscopic behaviors as they move through space. Their role as robust information carriers has also generated much attention. However, controlling…

There have been recent advances in the analysis and visualization of 3D symmetric tensor fields, with a focus on the robust extraction of tensor field topology. However, topological features such as degenerate curves and neutral surfaces do…

Graphics · Computer Science 2023-09-06 Shih-Hsuan Hung , Yue Zhang , Eugene Zhang

Continuum elasticity is a powerful tool applicable in a broad range of physical systems and phenomena. Yet, understanding how and on what scales material disorder may lead to the breakdown of continuum elasticity is not fully understood. We…

Soft Condensed Matter · Physics 2023-04-11 Edan Lerner , Eran Bouchbinder

Vascular networks play a crucial role in understanding brain functionalities. Brain integrity and function, neuronal activity and plasticity, which are crucial for learning, are actively modulated by their local environments, specifically…

Neurons and Cognition · Quantitative Biology 2024-02-28 Jiachen Yao , Nina Hagemann , Qiaojie Xiong , Jianxu Chen , Dirk M. Hermann , Chao Chen

We present a new overlay, called the {\em Deterministic Decentralized tree} ($D^2$-tree). The $D^2$-tree compares favourably to other overlays for the following reasons: (a) it provides matching and better complexities, which are…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-03-09 G. S. Brodal , S. Sioutas , K. Tsichlas , C. Zaroliagis

Topological disclinations, crystallographic defects that break rotation lattice symmetry, have attracted great interest and exhibited wide applications in cavities, waveguides, and lasers. However, topological disclinations have thus far…

Shrinking transistors, which powered the advancement of computing in the past half century, has stalled due to power wall; now extreme heterogeneity is promised to be the next driving force to feed the needs of ever-increasingly diverse…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-04-27 Hang Liu , Yufei Ding , Da Zheng , Seung Woo Son , Da Yan

Features of a topological phase, and edge states in particular, may be obscured by overlapping in energy with a trivial conduction band. The topological nature of such a conductor, however, is revealed in its transport properties,…

Mesoscale and Nanoscale Physics · Physics 2013-12-10 Alexandra Junck , Kun W. Kim , Doron L. Bergman , T. Pereg-Barnea , Gil Refael

Cell layers eliminate unwanted cells through the extrusion process, which underlines healthy versus flawed tissue behaviors. Although several biochemical pathways have been identified, the underlying mechanical basis including the forces…

Soft Condensed Matter · Physics 2023-04-20 Siavash Monfared , Guruswami Ravichandran , Jose E. Andrade , Amin Doostmohammadi

Cellular structures must organize themselves within strict physical constraints, operating with finite resources and well-defined boundaries. Classical systems demonstrate only passive responses to boundaries, from surface energy…

Statistical mechanics determines the abundance of different arrangements of matter depending on cost-benefit balances. Its formalism and phenomenology percolate throughout biological processes and set limits to effective computation. Under…

Neurons and Cognition · Quantitative Biology 2021-02-03 Luís F Seoane

Tailoring the design of robot bodies for control purposes is implicitly performed by engineers, however, a methodology or set of tools is largely absent and optimization of morphology (shape, material properties of robot bodies, etc.) is…

Robotics · Computer Science 2015-10-27 Matej Hoffmann , Vincent C. Müller

A disjunctive sensing and actuation problem is considered in which the actuators and sensors are prevented from operating together over any given time step. This problem is motivated by practical applications in the area of spacecraft…

Optimization and Control · Mathematics 2018-09-12 Richard L Sutherland , Ilya V Kolmanovsky , Anouck R Girard , Frederick A Leve , Christopher D Petersen

Cell deformability is an essential determinant for tissue-scale mechanical nature, such as fluidity and rigidity, and is thus crucial for understanding tissue homeostasis and stable developmental processes. However, numerical simulations…

Tissues and Organs · Quantitative Biology 2023-03-08 Nen Saito , Shuji Ishihara

Topological states can be used to control the mechanical properties of a material along an edge or around a localized defect. The surface rigidity of elastic networks is characterized by a bulk topological invariant called the polarization;…

Soft Condensed Matter · Physics 2018-03-02 Guido Baardink , Anton Souslov , Jayson Paulose , Vincenzo Vitelli
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