English
Related papers

Related papers: Protein atom traps as seeing by neutron scattering

200 papers

We investigate experimentally the entropy transfer between two distinguishable atomic quantum gases at ultralow temperatures. Exploiting a species-selective trapping potential, we are able to control the entropy of one target gas in…

The last decade has witnessed the remarkable progress in our understanding of thermalization in isolated quantum systems. Combining the eigenstate thermalization hypothesis with quantum measurement theory, we extend the framework of quantum…

Statistical Mechanics · Physics 2018-10-31 Yuto Ashida , Keiji Saito , Masahito Ueda

The creation of tunable open quantum systems is becoming feasible in current experiments with ultracold atoms in low-dimensional traps. In particular, the high degree of experimental control over these systems allows detailed studies of…

Quantum Gases · Physics 2015-04-17 R. Lundmark , C. Forssén , J. Rotureau

Configurable arrays of optically trapped Rydberg atoms are a versatile platform for quantum computation and quantum simulation, also allowing controllable decoherence. We demonstrate theoretically, that they also enable proof-of-principle…

Quantum Physics · Physics 2025-11-06 Kaustav Mukherjee , Johannes Schachenmayer , Shannon Whitlock , Sebastian Wüster

Proteins typically exist in complexes, interacting with other proteins or biomolecules to perform their specific biological roles. Research on single-chain protein modeling has been extensively and deeply explored, with advancements seen in…

Machine Learning · Computer Science 2025-09-09 Ruizhe Chen , Dongyu Xue , Xiangxin Zhou , Zaixiang Zheng , Xiangxiang Zeng , Quanquan Gu

The melting of a binary system of charged particles confined in a {\it quasi}-one-dimensional parabolic channel is studied through Monte Carlo simulations. At zero temperature the particles are ordered in parallel chains. The melting is…

Soft Condensed Matter · Physics 2015-05-19 W. P. Ferreira , G. A. Farias , F. M. Peeters

Natural proteins fold to a unique, thermodynamically dominant state. Modeling of the folding process and prediction of the native fold of proteins are two major unsolved problems in biophysics. Here, we show successful all-atom ab initio…

Biomolecules · Quantitative Biology 2007-05-23 Jae Shick Yang , William W. Chen , Jeffrey Skolnick , Eugene I. Shakhnovich

A model is developed which allows the investigation and classification of the pairing phase transition in atomic nuclei. The regions of the parameter space are discussed for which a pairing phase transition can be observed. The model…

Nuclear Theory · Physics 2009-11-07 A. Schiller , M. Guttormsen , M. Hjorth-Jensen , J. Rekstad , S. Siem

Sampling from flat energy or density distributions has proven useful in equilibrating complex systems with large energy barriers. Several thermostats and barostats are presented to sample these flat distributions by molecular dynamics.…

Computational Physics · Physics 2015-06-12 Cheng Zhang , Michael W. Deem

Quantum interfaces between photons and ensembles of atoms have emerged as powerful tools for quantum technologies. A major objective for such interfaces is high fidelity storage and retrieval of a photon in a collective quantum state of…

Both simple and sophisticated models are frequently used in an attempt to understand how real nuclei breakup when subjected to large excitation energies, a process known as nuclear multifragmentation. Many of these models assume…

Nuclear Theory · Physics 2009-10-31 J. B. Elliott , A. S. Hirsch

We review a series of experimental studies of the thermodynamics of nonequilibrium processes at the microscale. In particular, in these experiments we studied the fluctuations of the thermodynamic properties of a single optically-trapped…

Statistical Mechanics · Physics 2016-06-22 L. Dinis , I. A. Martínez , É. Roldán , J. M. R. Parrondo , R. A. Rica

A phenomenological model hamiltonian to describe the folding of a protein with any given sequence is proposed. The protein is thought of as a collection of pieces of helices; as a consequence its configuration space increases with the…

Soft Condensed Matter · Physics 2009-10-30 Pierpaolo Bruscolini

We propose an implementation of the quantum fast Fourier transform algorithm in an entangled system of multilevel atoms. The Fourier transform occurs naturally in the unitary time evolution of energy eigenstates and is used to define an…

Quantum Physics · Physics 2009-11-07 Ashok Muthukrishnan , C. R. Stroud

We argue that specific fluctuations observed in high-energy nuclear collisions can be attributed to intrinsic fluctuations of temperature of the hadronizing system formed in such processes and therefore can be described by the same…

High Energy Physics - Phenomenology · Physics 2011-11-28 Grzegorz Wilk , Zbigniew Wlodarczyk

A quantum system in contact with a heat bath undergoes quantum transitions between energy levels upon absorption or emission of energy quanta by the bath. These transitions remain virtual unless the energy of the system is measured…

Quantum Physics · Physics 2015-06-16 Michel Bauer , Denis Bernard

We present a holographic quantum simulation algorithm to variationally prepare thermal states of $d$-dimensional interacting quantum many-body systems, using only enough hardware qubits to represent a ($d$-1)-dimensional cross-section. This…

Quantum Physics · Physics 2022-10-17 Yuxuan Zhang , Shahin Jahanbani , Daoheng Niu , Reza Haghshenas , Andrew C. Potter

We present results of a hole burning study with thermal cycling and waiting time spectral diffusion experiments on a modified cytochrome - c protein in its native as well as in its denatured state. The experiments show features which seem…

Disordered Systems and Neural Networks · Physics 2009-11-10 Vladimir V. Ponkratov , Josef Friedrich , Jane M. Vanderkooi , Alexander L. Burin , Yuri A. Berlin

Quantum integrable systems have very strong mathematical properties that allow an exact description of their energetic spectrum. From the Bethe equations, I formulate the Baxter "T-Q" relation, that is the starting point of two…

Mathematical Physics · Physics 2015-03-17 Giovanni Feverati

Quantum technologies exploit entanglement to revolutionize computing, measurements, and communications. This has stimulated the research in different areas of physics to engineer and manipulate fragile many-particle entangled states.…

Quantum Physics · Physics 2018-11-13 Luca Pezzè , Augusto Smerzi , Markus K. Oberthaler , Roman Schmied , Philipp Treutlein