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We describe a robust, fast, and memory-efficient procedure that can cluster millions of structures derived from molecular dynamics simulations. The essence of the method is based on a peak-picking algorithm applied to three- and…

Biomolecules · Quantitative Biology 2015-12-15 Athanasios S. Baltzis , Panagiotis I. Koukos , Nicholas M. Glykos

We propose an algorithm for clustering high dimensional data. If $P$ features for $N$ objects are represented in an $N\times P$ matrix ${\bf X}$, where $N\ll P$, the method is based on exploiting the cluster-dependent structure of the…

Machine Learning · Statistics 2018-11-05 Shahina Rahman , Valen E. Johnson

In the context of Vehicular ad-hoc networks (VANETs), the hierarchical management of intelligent vehicles, based on clustering methods, represents a well-established solution for effectively addressing scalability and reliability issues.…

Computer Science and Game Theory · Computer Science 2025-03-12 Weiyi Yang , Xiaolu Liu , Lei He , Yonghao Du , Yingwu Chen

Federated Clustering (FC) is an emerging and promising solution in exploring data distribution patterns from distributed and privacy-protected data in an unsupervised manner. Existing FC methods implicitly rely on the assumption that…

Machine Learning · Computer Science 2026-03-16 Yue Zhang , Chuanlong Qiu , Xinfa Liao , Yiqun Zhang

Many real-world problems are dynamic optimization problems. In this case, the optima in the environment change dynamically. Therefore, traditional optimization algorithms disable to track and find optima. In this paper, a new multi-swarm…

Neural and Evolutionary Computing · Computer Science 2013-08-08 Somayeh Nabizadeh , Alireza Rezvanian , Mohammd Reza Meybodi

Clustering problems are considered amongst the prominent challenges in statistics and computational science. Clustering of nodes in wireless sensor networks which is used to prolong the life-time of networks is one of the difficult tasks of…

Artificial Intelligence · Computer Science 2015-06-02 Reza Azizi , Hasan Sedghi , Hamid Shoja , Alireza Sepas-Moghaddam

Most of the research on clustering ensemble focuses on designing practical consistency learning algorithms.To solve the problems that the quality of base clusters varies and the low-quality base clusters have an impact on the performance of…

Machine Learning · Computer Science 2024-11-04 Jianwen Gan , Yan Chen , Peng Zhou , Liang Du

Emergent processes in complex systems such as cellular automata can perform computations of increasing complexity, and could possibly lead to artificial evolution. Such a feat would require scaling up current simulation sizes to allow for…

Cellular Automata and Lattice Gases · Physics 2021-04-05 Hugo Cisneros , Josef Sivic , Tomas Mikolov

We develop a new density-based clustering algorithm named CRAD which is based on a new neighbor searching function with a robust data depth as the dissimilarity measure. Our experiments prove that the new CRAD is highly competitive at…

Computation · Statistics 2019-04-09 Xin Huang , Yulia R. Gel

In this paper, I will introduce a fast and novel clustering algorithm based on Gaussian distribution and it can guarantee the separation of each cluster centroid as a given parameter, $d_s$. The worst run time complexity of this algorithm…

Databases · Computer Science 2019-10-22 Yuan-Yen Tai

Clustering algorithms have significantly improved along with Deep Neural Networks which provide effective representation of data. Existing methods are built upon deep autoencoder and self-training process that leverages the distribution of…

Computer Vision and Pattern Recognition · Computer Science 2021-09-17 Xin Ma , Won Hwa Kim

Unsupervised clustering algorithm can effectively reduce the dimension of high-dimensional unlabeled data, thus reducing the time and space complexity of data processing. However, the traditional clustering algorithm needs to set the upper…

Machine Learning · Computer Science 2022-01-17 Zecang Gu , Xiaoqi Sun , Yuan Sun , Fuquan Zhang

Pairwise clustering, in general, partitions a set of items via a known similarity function. In our treatment, clustering is modeled as a transductive prediction problem. Thus rather than beginning with a known similarity function, the…

Machine Learning · Computer Science 2017-06-21 Stephen Pasteris , Fabio Vitale , Claudio Gentile , Mark Herbster

Clustering performs an essential role in many real world applications, such as market research, pattern recognition, data analysis, and image processing. However, due to the high dimensionality of the input feature values, the data being…

Machine Learning · Computer Science 2021-02-16 Si Lu , Ruisi Li

Quantum computation based on quantum cellular automata (QCA) can greatly reduce the control and precision necessary for experimental implementations of quantum information processing. A QCA system consists of a few species of qubits in…

Quantum Physics · Physics 2009-11-10 Yaakov S. Weinstein , C. Stephen Hellberg

We discuss a new Monte Carlo algorithm for the simulation of complex fluids. This algorithm employs geometric operations to identify clusters of particles that can be moved in a rejection-free way. It is demonstrated that this geometric…

Statistical Mechanics · Physics 2015-06-25 Erik Luijten , Jiwen Liu

Despite considerable success, large Denoising Diffusion Models (DDMs) with UNet backbone pose practical challenges, particularly on limited hardware and in processing gigapixel images. To address these limitations, we introduce two Neural…

Computer Vision and Pattern Recognition · Computer Science 2024-05-14 John Kalkhof , Arlene Kühn , Yannik Frisch , Anirban Mukhopadhyay

We review the background of the cluster algorithms in Monte Carlo simulation of statistical physics problems. One of the first such successful algorithm was developed by Swendsen and Wang eight years ago. In contrast to the local…

Condensed Matter · Physics 2007-05-23 Jian-Sheng Wang

In this paper we propose a Deep Autoencoder MIxture Clustering (DAMIC) algorithm based on a mixture of deep autoencoders where each cluster is represented by an autoencoder. A clustering network transforms the data into another space and…

Machine Learning · Computer Science 2019-03-28 Shlomo E. Chazan , Sharon Gannot , Jacob Goldberger

Spectral clustering is a fast and popular algorithm for finding clusters in networks. Recently, Chaudhuri et al. (2012) and Amini et al.(2012) proposed inspired variations on the algorithm that artificially inflate the node degrees for…

Machine Learning · Statistics 2013-09-18 Tai Qin , Karl Rohe
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