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De novo molecule generation can suffer from data inefficiency; requiring large amounts of training data or many sampled data points to conduct objective optimization. The latter is a particular disadvantage when combining deep generative…

Computational Engineering, Finance, and Science · Computer Science 2025-10-30 Morgan Thomas , Noel M. O'Boyle , Andreas Bender , Chris De Graaf

This paper aims for the language-based product image retrieval task. The majority of previous works have made significant progress by designing network structure, similarity measurement, and loss function. However, they typically perform…

Computer Vision and Pattern Recognition · Computer Science 2021-02-19 Zhe Ma , Fenghao Liu , Jianfeng Dong , Xiaoye Qu , Yuan He , Shouling Ji

Text-to-SQL generation bridges the gap between natural language and databases, enabling users to query data without requiring SQL expertise. While large language models (LLMs) have significantly advanced the field, challenges remain in…

Machine Learning · Computer Science 2025-12-18 Ganesh Parab , Zishan Ahmad , Dagnachew Birru

Diffusion models (DMs) have recently been introduced in image deblurring and exhibited promising performance, particularly in terms of details reconstruction. However, the diffusion model requires a large number of inference iterations to…

Computer Vision and Pattern Recognition · Computer Science 2023-09-26 Zheng Chen , Yulun Zhang , Ding Liu , Bin Xia , Jinjin Gu , Linghe Kong , Xin Yuan

Low-dimensional embeddings are widely used as visual summaries of high-dimensional data and to enable downstream scientific discoveries. Yet, popular nonlinear dimension reduction methods, such as t-SNE and UMAP, are often selected based on…

Machine Learning · Statistics 2026-05-29 Irene Chang , Tarek M. Zikry , Genevera I. Allen

Molecule-and-text cross-modal representation learning has emerged as a promising direction for enhancing the quality of molecular representation, thereby improving performance in various scientific fields. However, most approaches employ a…

Quantitative Methods · Quantitative Biology 2025-03-04 Yikun Zhang , Geyan Ye , Chaohao Yuan , Bo Han , Long-Kai Huang , Jianhua Yao , Wei Liu , Yu Rong

Generative AI presents chemists with novel ideas for drug design and facilitates the exploration of vast chemical spaces. Diffusion models (DMs), an emerging tool, have recently attracted great attention in drug R\&D. This paper…

Biomolecules · Quantitative Biology 2025-07-14 Peining Zhang , Daniel Baker , Minghu Song , Jinbo Bi

Accurate prediction of Drug-Target Affinity (DTA) is crucial for reducing experimental costs and accelerating early screening in computational drug discovery. While sequence-based deep learning methods avoid reliance on costly 3D…

Machine Learning · Computer Science 2025-11-03 Minghui Li , Yuanhang Wang , Peijin Guo , Wei Wan , Shengshan Hu , Shengqing Hu

Deep generative models are rapidly advancing structure-based drug design, offering substantial promise for generating small molecule ligands that bind to specific protein targets. However, most current approaches assume a rigid protein…

Biomolecules · Quantitative Biology 2025-11-19 Xinzhe Zheng , Shiyu Jiang , Gustavo Seabra , Chenglong Li , Yanjun Li

Molecular representation learning is pivotal in predicting molecular properties and advancing drug design. Traditional methodologies, which predominantly rely on homogeneous graph encoding, are limited by their inability to integrate…

Machine Learning · Computer Science 2025-03-24 Mukun Chen , Jia Wu , Shirui Pan , Fu Lin , Bo Du , Xiuwen Gong , Wenbin Hu

Existing infrared and visible image fusion methods often face the dilemma of balancing modal information. Generative fusion methods reconstruct fused images by learning from data distributions, but their generative capabilities remain…

Computer Vision and Pattern Recognition · Computer Science 2025-10-31 Lin Guo , Xiaoqing Luo , Wei Xie , Zhancheng Zhang , Hui Li , Rui Wang , Zhenhua Feng , Xiaoning Song

Machine learning (ML) offers considerable promise for the design of new molecules and materials. In real-world applications, the design problem is often domain-specific, and suffers from insufficient data, particularly labeled data, for ML…

Chemical Physics · Physics 2025-02-04 Ming Han , Ge Sun , Juan J. de Pablo

Transformer is important for text modeling. However, it has difficulty in handling long documents due to the quadratic complexity with input text length. In order to handle this problem, we propose a hierarchical interactive Transformer…

Computation and Language · Computer Science 2021-12-10 Chuhan Wu , Fangzhao Wu , Tao Qi , Yongfeng Huang

Accurately predicting gene expression from histopathology images offers a scalable and non-invasive approach to molecular profiling, with significant implications for precision medicine and computational pathology. However, existing methods…

Computer Vision and Pattern Recognition · Computer Science 2025-12-09 Yaxuan Song , Jianan Fan , Hang Chang , Weidong Cai

The task of multi-label image classification involves recognizing multiple objects within a single image. Considering both valuable semantic information contained in the labels and essential visual features presented in the image, tight…

Computer Vision and Pattern Recognition · Computer Science 2024-07-24 Shuyi Ouyang , Hongyi Wang , Ziwei Niu , Zhenjia Bai , Shiao Xie , Yingying Xu , Ruofeng Tong , Yen-Wei Chen , Lanfen Lin

Human multimodal emotion recognition (MER) seeks to infer human emotions by integrating information from language, visual, and acoustic modalities. Although existing MER approaches have achieved promising results, they still struggle with…

Computer Vision and Pattern Recognition · Computer Science 2026-02-05 Yong Li , Yuanzhi Wang , Yi Ding , Shiqing Zhang , Ke Lu , Cuntai Guan

Diffusion Models have emerged as a leading class of generative models, yet their iterative sampling process remains computationally expensive. Timestep distillation is a promising technique to accelerate generation, but it often requires…

Computer Vision and Pattern Recognition · Computer Science 2025-11-26 Guanjie Chen , Shirui Huang , Kai Liu , Jianchen Zhu , Xiaoye Qu , Peng Chen , Yu Cheng , Yifu Sun

Deep generative models that produce novel molecular structures have the potential to facilitate chemical discovery. Diffusion models currently achieve state of the art performance for 3D molecule generation. In this work, we explore the use…

Biomolecules · Quantitative Biology 2024-05-01 Ian Dunn , David Ryan Koes

Advancements in text-to-image generative AI with large multimodal models are spreading into the field of image compression, creating high-quality representation of images at extremely low bit rates. This work introduces novel components to…

Image and Video Processing · Electrical Eng. & Systems 2025-06-02 Cheng-Lin Wu , Hyomin Choi , Ivan V. Bajić

Crucial to many measurements at the LHC is the use of correlated multi-dimensional information to distinguish rare processes from large backgrounds, which is complicated by the poor modeling of many of the crucial backgrounds in Monte Carlo…

High Energy Physics - Phenomenology · Physics 2025-11-26 Oz Amram , Manuel Szewc