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Molecular interactions often involve high-order relationships that cannot be fully captured by traditional graph-based models limited to pairwise connections. Hypergraphs naturally extend graphs by enabling multi-way interactions, making…

Machine Learning · Computer Science 2025-05-12 Tien Dang , Truong-Son Hy

Diffusion models have gained tremendous success in text-to-image generation, yet still lag behind with visual understanding tasks, an area dominated by autoregressive vision-language models. We propose a large-scale and fully end-to-end…

Computer Vision and Pattern Recognition · Computer Science 2025-04-03 Zijie Li , Henry Li , Yichun Shi , Amir Barati Farimani , Yuval Kluger , Linjie Yang , Peng Wang

Multi-modal learning plays a crucial role in cancer diagnosis and prognosis. Current deep learning based multi-modal approaches are often limited by their abilities to model the complex correlations between genomics and histology data,…

Image and Video Processing · Electrical Eng. & Systems 2024-06-21 Yupei Zhang , Xiaofei Wang , Fangliangzi Meng , Jin Tang , Chao Li

Few-shot image generation aims to generate diverse and high-quality images for an unseen class given only a few examples in that class. A key challenge in this task is balancing category consistency and image diversity, which often compete…

Computer Vision and Pattern Recognition · Computer Science 2025-09-08 Lingxiao Li , Kaixuan Fan , Boqing Gong , Xiangyu Yue

We study how to generate molecule conformations (i.e., 3D structures) from a molecular graph. Traditional methods, such as molecular dynamics, sample conformations via computationally expensive simulations. Recently, machine learning…

Machine Learning · Computer Science 2021-04-01 Minkai Xu , Shitong Luo , Yoshua Bengio , Jian Peng , Jian Tang

Recent progress in text-to-3D generation has been achieved through the utilization of score distillation methods: they make use of the pre-trained text-to-image (T2I) diffusion models by distilling via the diffusion model training…

Computer Vision and Pattern Recognition · Computer Science 2024-03-25 Kyungmin Lee , Kihyuk Sohn , Jinwoo Shin

The bifurcation of generative modeling into autoregressive approaches for discrete data (text) and diffusion approaches for continuous data (images) hinders the development of truly unified multimodal systems. While Masked Language Models…

Computation and Language · Computer Science 2026-01-08 Yuanfeng Xu , Yuhao Chen , Liang Lin , Guangrun Wang

Molecular property prediction, crucial for early drug candidate screening and optimization, has seen advancements with deep learning-based methods. While deep learning-based methods have advanced considerably, they often fall short in fully…

Biomolecules · Quantitative Biology 2024-07-01 Taojie Kuang , Yiming Ren , Zhixiang Ren

Drug Discovery is a fundamental and ever-evolving field of research. The design of new candidate molecules requires large amounts of time and money, and computational methods are being increasingly employed to cut these costs. Machine…

Machine Learning · Statistics 2021-05-28 Pietro Bongini , Monica Bianchini , Franco Scarselli

Molecular representation learning lays the foundation for drug discovery. However, existing methods suffer from poor out-of-distribution (OOD) generalization, particularly when data for training and testing originate from different…

Machine Learning · Computer Science 2023-10-24 Xiang Zhuang , Qiang Zhang , Keyan Ding , Yatao Bian , Xiao Wang , Jingsong Lv , Hongyang Chen , Huajun Chen

A well-known approach to describe the dynamics of an open quantum system is to compute the master equation evolving the reduced density matrix of the system. This approach plays an important role in describing excitation transfer through…

Quantum Physics · Physics 2022-10-25 Kimara Naicker , Ilya Sinayskiy , Francesco Petruccione

Recent works on personalized text-to-image generation usually learn to bind a special token with specific subjects or styles of a few given images by tuning its embedding through gradient descent. It is natural to question whether we can…

Computer Vision and Pattern Recognition · Computer Science 2023-04-13 Zhengcong Fei , Mingyuan Fan , Junshi Huang

Accurately predicting molecular properties is a challenging but essential task in drug discovery. Recently, many mono-modal deep learning methods have been successfully applied to molecular property prediction. However, the inherent…

Machine Learning · Computer Science 2024-09-16 Xiaohua Lu , Liangxu Xie , Lei Xu , Rongzhi Mao , Shan Chang , Xiaojun Xu

We develop an approach for text-to-image generation that embraces additional retrieval images, driven by a combination of implicit visual guidance loss and generative objectives. Unlike most existing text-to-image generation methods which…

Computer Vision and Pattern Recognition · Computer Science 2022-08-19 Xin Yuan , Zhe Lin , Jason Kuen , Jianming Zhang , John Collomosse

Direct imaging of molecular dynamics is a long-standing goal in physics and chemistry. As an emerging tool, high-harmonic spectroscopy (HHS) enables accessing molecular dynamics on femtosecond to attosecond time scales. However, decoding…

This paper introduces Hierarchical Image Steganography, a novel method that enhances the security and capacity of embedding multiple images into a single container using diffusion models. HIS assigns varying levels of robustness to images…

Computer Vision and Pattern Recognition · Computer Science 2024-05-21 Youmin Xu , Xuanyu Zhang , Jiwen Yu , Chong Mou , Xiandong Meng , Jian Zhang

Our work introduces an innovative approach to graph learning by leveraging Hyperdimensional Computing. Graphs serve as a widely embraced method for conveying information, and their utilization in learning has gained significant attention.…

Machine Learning · Computer Science 2024-03-20 Pere Verges , Igor Nunes , Mike Heddes , Tony Givargis , Alexandru Nicolau

We present a hierarchical neural message passing architecture for learning on molecular graphs. Our model takes in two complementary graph representations: the raw molecular graph representation and its associated junction tree, where nodes…

Machine Learning · Computer Science 2020-06-23 Matthias Fey , Jan-Gin Yuen , Frank Weichert

Hierarchical Extreme Multi-Label Classification poses greater difficulties compared to traditional multi-label classification because of the intricate hierarchical connections of labels within a domain-specific taxonomy and the substantial…

Machine Learning · Computer Science 2025-05-08 Linqing Chen , Weilei Wang , Wentao Wu , Hanmeng Zhong

Transferring large amount of high resolution images over limited bandwidth is an important but very challenging task. Compressing images using extremely low bitrates (<0.1 bpp) has been studied but it often results in low quality images of…

Image and Video Processing · Electrical Eng. & Systems 2022-11-16 Zhihong Pan , Xin Zhou , Hao Tian