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Transcribing structured data into natural language descriptions has emerged as a challenging task, referred to as "data-to-text". These structures generally regroup multiple elements, as well as their attributes. Most attempts rely on…

Computation and Language · Computer Science 2019-12-23 Clément Rebuffel , Laure Soulier , Geoffrey Scoutheeten , Patrick Gallinari

De novo generation of hit-like molecules is a challenging task in the drug discovery process. Most methods in previous studies learn the semantics and syntax of molecular structures by analyzing molecular graphs or simplified molecular…

Machine Learning · Computer Science 2025-04-18 Chen Li , Yoshihiro Yamanishi

The quadratic computational cost of processing vision tokens in Multimodal Large Language Models (MLLMs) hinders their widespread adoption. While progressive vision token pruning offers a promising solution, current methods misinterpret…

Computer Vision and Pattern Recognition · Computer Science 2026-03-02 Hao Wu , Yingqi Fan , Jinyang Dai , Junlong Tong , Yunpu Ma , Xiaoyu Shen

Significant interests have recently risen in leveraging sequence-based large language models (LLMs) for drug design. However, most current applications of LLMs in drug discovery lack the ability to comprehend three-dimensional (3D)…

We propose a hierarchical normalizing flow model for generating molecular graphs. The model produces new molecular structures from a single-node graph by recursively splitting every node into two. All operations are invertible and can be…

Chemical Physics · Physics 2021-06-11 Maksim Kuznetsov , Daniil Polykovskiy

Property-constrained molecular generation and editing are crucial in AI-driven drug discovery but remain hindered by two factors: (i) capturing the complex relationships between molecular structures and multiple properties remains…

Machine Learning · Computer Science 2025-11-12 Ziyu Fan , Zhijian Huang , Yahan Li , Xiaowen Hu , Siyuan Shen , Yunliang Wang , Zeyu Zhong , Shuhong Liu , Shuning Yang , Shangqian Wu , Min Wu , Lei Deng

In semi-supervised learning, methods that rely on confidence learning to generate pseudo-labels have been widely proposed. However, increasing research finds that when faced with noisy and biased data, the model's representation network is…

Computer Vision and Pattern Recognition · Computer Science 2024-04-29 Yanbiao Ma , Licheng Jiao , Fang Liu , Lingling Li , Shuyuan Yang , Xu Liu

Molecule generation is central to a variety of applications. Current attention has been paid to approaching the generation task as subgraph prediction and assembling. Nevertheless, these methods usually rely on hand-crafted or external…

Machine Learning · Computer Science 2022-12-20 Xiangzhe Kong , Wenbing Huang , Zhixing Tan , Yang Liu

Molecular representation is a critical element in our understanding of the physical world and the foundation for modern molecular machine learning. Previous molecular machine learning models have employed strings, fingerprints, global…

Machine Learning · Computer Science 2025-05-28 Daniil A. Boiko , Thiago Reschützegger , Benjamin Sanchez-Lengeling , Samuel M. Blau , Gabe Gomes

Generating molecular structures with desired properties is a critical task with broad applications in drug discovery and materials design. We propose 3M-Diffusion, a novel multi-modal molecular graph generation method, to generate diverse,…

Machine Learning · Computer Science 2024-10-04 Huaisheng Zhu , Teng Xiao , Vasant G Honavar

Compared with standard text, understanding dialogue is more challenging for machines as the dynamic and unexpected semantic changes in each turn. To model such inconsistent semantics, we propose a simple but effective Hierarchical Dialogue…

Computation and Language · Computer Science 2023-05-02 Xiao Liu , Jian Zhang , Heng Zhang , Fuzhao Xue , Yang You

Long Document Classification (LDC) has gained significant attention recently. However, multi-modal data in long documents such as texts and images are not being effectively utilized. Prior studies in this area have attempted to integrate…

Computer Vision and Pattern Recognition · Computer Science 2024-07-16 Tengfei Liu , Yongli Hu , Junbin Gao , Yanfeng Sun , Baocai Yin

Multimodal large language models (MLLMs) improve performance on vision-language tasks by integrating visual features from pre-trained vision encoders into large language models (LLMs). However, how MLLMs process and utilize visual…

Computer Vision and Pattern Recognition · Computer Science 2025-03-18 Hao Yin , Guangzong Si , Zilei Wang

Machine learning catalyzes a revolution in chemical and biological science. However, its efficacy heavily depends on the availability of labeled data, and annotating biochemical data is extremely laborious. To surmount this data sparsity…

Machine Learning · Computer Science 2026-01-08 Fang Wu , Shuting Jin , Siyuan Li , Stan Z. Li

Pre-trained Vision-Language Models (VLMs) such as CLIP have shown excellent generalization abilities. However, adapting these large-scale models to downstream tasks while preserving their generalization capabilities remains challenging.…

Computer Vision and Pattern Recognition · Computer Science 2025-08-15 Hao Zheng , Shunzhi Yang , Zhuoxin He , Jinfeng Yang , Zhenhua Huang

Generating molecules with desired biological activities has attracted growing attention in drug discovery. Previous molecular generation models are designed as chemocentric methods that hardly consider the drug-target interaction, limiting…

Machine Learning · Computer Science 2022-10-24 Cheng Tan , Zhangyang Gao , Stan Z. Li

Deep image watermarking, which refers to enabling imperceptible watermark embedding and reliable extraction in cover images, has been shown to be effective for copyright protection of image assets. However, existing methods face limitations…

Computer Vision and Pattern Recognition · Computer Science 2026-01-13 Ke Liu , Xuanhan Wang , Qilong Zhang , Lianli Gao , Jingkuan Song

Recent advancements in text-to-image diffusion models have shown remarkable creative capabilities with textual prompts, but generating personalized instances based on specific subjects, known as subject-driven generation, remains…

Computer Vision and Pattern Recognition · Computer Science 2024-10-11 Shanyan Guan , Yanhao Ge , Ying Tai , Jian Yang , Wei Li , Mingyu You

Graphic design, which has been evolving since the 15th century, plays a crucial role in advertising. The creation of high-quality designs demands design-oriented planning, reasoning, and layer-wise generation. Unlike the recent CanvaGPT,…

Computer Vision and Pattern Recognition · Computer Science 2024-03-20 Peidong Jia , Chenxuan Li , Yuhui Yuan , Zeyu Liu , Yichao Shen , Bohan Chen , Xingru Chen , Yinglin Zheng , Dong Chen , Ji Li , Xiaodong Xie , Shanghang Zhang , Baining Guo

Goal-directed molecular generation requires satisfying heterogeneous constraints such as protein--ligand compatibility and multi-objective drug-like properties, yet existing methods often optimize these constraints in isolation, failing to…

Machine Learning · Computer Science 2026-04-14 Yanting Li , Zhuoyang Jiang , Enyan Dai , Lei Wang , Wen-Cai Ye , Li Liu