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Many biochemical processes can successfully be described by dynamical systems allowing some form of switching when, depending on their initial conditions, solutions of the dynamical system end up in different regions of state space…

Molecular Networks · Quantitative Biology 2011-09-27 Carsten Conradi , Dietrich Flockerzi

While machine learning (ML) models have been able to achieve unprecedented accuracies across various prediction tasks in quantum chemistry, it is now apparent that accuracy on a test set alone is not a guarantee for robust chemical modeling…

We propose machine learning methods for solving fully nonlinear partial differential equations (PDEs) with convex Hamiltonian. Our algorithms are conducted in two steps. First the PDE is rewritten in its dual stochastic control…

Computational Finance · Quantitative Finance 2022-05-23 William Lefebvre , Grégoire Loeper , Huyên Pham

Density functional theory (DFT) has become a standard tool for the study of point defects in materials. However, finding the most stable defective structures remains a very challenging task as it involves the solution of a multimodal…

Materials Science · Physics 2020-11-16 Marco Arrigoni , Georg K. H. Madsen

We study the asymptotic behavior of second-order algorithms mixing Newton's method and inertial gradient descent in non-convex landscapes. We show that, despite the Newtonian behavior of these methods, they almost always escape strict…

Optimization and Control · Mathematics 2024-02-13 Camille Castera

Saddle point search schemes are widely used to identify the transition state of different processes, like chemical reactions, surface and bulk diffusion, surface adsorption, and many more. In solid-state materials with relatively large…

Materials Science · Physics 2024-02-22 Seyyedfaridoddin Fattahpour , Sara Kadkhodaei

We have developed a deep learning algorithm for chemical shift prediction for atoms in molecular crystals that utilizes an atom-centered Gaussian density model for the 3D data representation of a molecule. We define multiple channels that…

In this work we apply deep neural networks to find the non-equilibrium steady state solution to correlated open quantum many-body systems. Motivated by the ongoing search to find more powerful representations of (mixed) quantum states, we…

Quantum Physics · Physics 2025-01-13 Johannes Mellak , Enrico Arrigoni , Wolfgang von der Linden

The Deep Operator Network (DeepONet) structure has shown great potential in approximating complex solution operators with low generalization errors. Recently, a sequential DeepONet (S-DeepONet) was proposed to use sequential learning models…

Computational Engineering, Finance, and Science · Computer Science 2024-06-17 Junyan He , Shashank Kushwaha , Jaewan Park , Seid Koric , Diab Abueidda , Iwona Jasiuk

Density Functional Theory (DFT) has been a cornerstone in computational science, providing powerful insights into structure-property relationships for molecules and materials through first-principles quantum-mechanical (QM) calculations.…

Chemical Physics · Physics 2024-08-13 Yicheng Chen , Wenjie Yan , Zhanfeng Wang , Jianming Wu , Xin Xu

The ab initio calculation of exact quantum reaction rate constants comes at a high cost due to the required dynamics of reactants on multidimensional potential energy surfaces. In turn, this impedes the rapid design of the kinetics for…

Chemical Physics · Physics 2020-09-23 Evan Komp , Stéphanie Valleau

Computational virtual high-throughput screening (VHTS) with density functional theory (DFT) and machine-learning (ML)-acceleration is essential in rapid materials discovery. By necessity, efficient DFT-based workflows are carried out with a…

Materials Science · Physics 2021-06-25 Chenru Duan , Shuxin Chen , Michael G. Taylor , Fang Liu , Heather J. Kulik

Large-scale computations of fission properties are an important ingredient for nuclear reaction network calculations simulating rapid neutron-capture process (the r process) nucleosynthesis. Due to the large number of fissioning nuclei…

Nuclear Theory · Physics 2024-04-04 Daniel Lay , Eric Flynn , Samuel A. Giuliani , Witold Nazarewicz , Leó Neufcourt

Deep learning algorithms often require solving a highly non-linear and nonconvex unconstrained optimization problem. Methods for solving optimization problems in large-scale machine learning, such as deep learning and deep reinforcement…

Machine Learning · Computer Science 2019-09-06 Jacob Rafati , Roummel F. Marcia

While deep learning is transforming data analysis in high-energy physics, computational challenges limit its potential. We address these challenges in the context of collider physics by introducing EveNet, an event-level foundation model…

We introduce a new method, called CNNAS (convolutional neural networks for atomistic systems), for calculating the total energy of atomic systems which rivals the computational cost of empirical potentials while maintaining the accuracy of…

Materials Science · Physics 2018-03-21 Kevin Ryczko , Kyle Mills , Iryna Luchak , Christa Homenick , Isaac Tamblyn

The majority of machine learning methods can be regarded as the minimization of an unavailable risk function. To optimize the latter, given samples provided in a streaming fashion, we define a general stochastic Newton algorithm and its…

Statistics Theory · Mathematics 2023-06-30 Claire Boyer , Antoine Godichon-Baggioni

Optimal engine operation during a transient driving cycle is the key to achieving greater fuel economy, engine efficiency, and reduced emissions. In order to achieve continuously optimal engine operation, engine calibration methods use a…

Machine Learning · Computer Science 2019-09-24 Shashi M. Aithal , Prasanna Balaprakash

The nuclear fuel loading pattern optimization problem belongs to the class of large-scale combinatorial optimization. It is also characterized by multiple objectives and constraints, which makes it impossible to solve explicitly. Stochastic…

Machine Learning · Computer Science 2023-07-18 Paul Seurin , Koroush Shirvan

In this work we present a fast, globally convergent, iterative algorithm for computing the asymptotically stable states of nonlinear large--scale systems of quadratic autonomous Ordinary Differential Equations (ODEs) modeling, e.g., the…

Numerical Analysis · Mathematics 2023-01-02 Silvia Berra , Alessandro La Torraca , Federico Benvenuto , Sara Sommariva