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Despite deep learning's success in chemistry, its impact is hindered by a lack of interpretability and an inability to resolve activity cliffs, where minor structural nuances trigger drastic property shifts. Current representation learning,…

Machine Learning · Computer Science 2026-03-26 Xiangsen Chen , Ruilong Wu , Yanyan Lan , Ting Ma , Yang Liu

This paper proposes a push and pull search (PPS) framework for solving constrained multi-objective optimization problems (CMOPs). To be more specific, the proposed PPS divides the search process into two different stages, including the push…

Neural and Evolutionary Computing · Computer Science 2017-09-19 Zhun Fan , Wenji Li , Xinye Cai , Hui Li , Caimin Wei , Qingfu Zhang , Kalyanmoy Deb , Erik D. Goodman

Evolutionary algorithms excel in solving complex optimization problems, especially those with multiple objectives. However, their stochastic nature can sometimes hinder rapid convergence to the global optima, particularly in scenarios…

Neural and Evolutionary Computing · Computer Science 2024-05-10 Zeyi Wang , Songbai Liu , Jianyong Chen , Kay Chen Tan

We study Crystal Structure Prediction, one of the major problems in computational chemistry. This is essentially a continuous optimization problem, where many different, simple and sophisticated, methods have been proposed and applied. The…

Computational Engineering, Finance, and Science · Computer Science 2020-03-30 Dmytro Antypov , Argyrios Deligkas , Vladimir Gusev , Matthew J. Rosseinsky , Paul G. Spirakis , Michail Theofilatos

We describe a software package, TomOpt, developed to optimise the geometrical layout and specifications of detectors designed for tomography by scattering of cosmic-ray muons. The software exploits differentiable programming for the…

Crystallization is a key step in macromolecular structure determination by crystallography. While a robust theoretical treatment of the process is available, due to the complexity of the system, the experimental process is still largely one…

Biomolecules · Quantitative Biology 2016-08-02 Irem Altan , Patrick Charbonneau , Edward H. Snell

Evolutionary prompt optimization has demonstrated effectiveness in refining prompts for LLMs. However, existing approaches lack robust operators and efficient evaluation mechanisms. In this work, we propose several key improvements to…

Computation and Language · Computer Science 2025-11-10 Daniel Grießhaber , Maximilian Kimmich , Johannes Maucher , Ngoc Thang Vu

Distributed optimization has become the default training paradigm in modern machine learning due to the growing scale of models and datasets. To mitigate communication overhead, local updates are often applied before global aggregation,…

Machine Learning · Computer Science 2025-08-15 Su Hyeong Lee , Manzil Zaheer , Tian Li

The objective of this research is to optimize the eleventh iteration of You Only Look Once (YOLOv11) by developing size-specific modified versions of the architecture. These modifications involve pruning unnecessary layers and reconfiguring…

Computer Vision and Pattern Recognition · Computer Science 2025-07-08 Areeg Fahad Rasheed , M. Zarkoosh

Solving constrained optimization problems by multi-objective evolutionary algorithms has scored tremendous achievements in the last decade. Standard multi-objective schemes usually aim at minimizing the objective function and also the…

Neural and Evolutionary Computing · Computer Science 2015-10-02 Tao Xu , Jun He

BayesOpt is a library with state-of-the-art Bayesian optimization methods to solve nonlinear optimization, stochastic bandits or sequential experimental design problems. Bayesian optimization is sample efficient by building a posterior…

Machine Learning · Computer Science 2014-05-30 Ruben Martinez-Cantin

Manual engineering of high-performance implementations typically consumes many resources and requires in-depth knowledge of the hardware. Compilers try to address these problems; however, they are limited by design in what they can do. To…

Crystal structure prediction (CSP) has proven to be a highly effective route for discovering new materials. Substantial advancements have been made in CSP of inorganic and molecular crystals, while hybrid materials, including metal-organic…

Materials Science · Physics 2024-12-17 Elizaveta Yakovenko , Iurii Nevolin , Anatoliy Chasovskikh , Artem Mitrofanov , Vadim Korolev

The large-scale multiobjective optimization problem (LSMOP) is characterized by simultaneously optimizing multiple conflicting objectives and involving hundreds of decision variables. Many real-world applications in engineering fields can…

Neural and Evolutionary Computing · Computer Science 2023-04-17 Haokai Hong , Min Jiang , Gary G. Yen

We describe in this paper a new, public software for accurate "PSF-matched" multiband photometry for images of different resolution and depth, that we have named ConvPhot, of which we analyse performances and limitations. It is designed to…

Astrophysics · Physics 2009-11-13 C. De Santis , A. Grazian , A. Fontana , P. Santini

With the demand for machine learning increasing, so does the demand for tools which make it easier to use. Automated machine learning (AutoML) tools have been developed to address this need, such as the Tree-Based Pipeline Optimization Tool…

Neural and Evolutionary Computing · Computer Science 2018-03-13 Pieter Gijsbers , Joaquin Vanschoren , Randal S. Olson

We present the implementation of GAtor, a massively parallel, first principles genetic algorithm (GA) for molecular crystal structure prediction. GAtor is written in Python and currently interfaces with the FHI-aims code to perform local…

Materialized views can significantly improve database query performance but identifying the optimal set of views to materialize is challenging. Prior work on automating and optimizing materialized view selection has limitations in execution…

Databases · Computer Science 2024-04-01 Mahdi Manavi

Optimization problems are prevalent across various scenarios. Formulating and then solving optimization problems described by natural language often requires highly specialized human expertise, which could block the widespread application…

Artificial Intelligence · Computer Science 2025-03-04 Caigao Jiang , Xiang Shu , Hong Qian , Xingyu Lu , Jun Zhou , Aimin Zhou , Yang Yu

An efficient and versatile implementation of offline multiple hypothesis tracking with Algorithm X for optimal association search was developed using Python. The code is intended for scientific applications that do not require online…

Computer Vision and Pattern Recognition · Computer Science 2022-03-14 Peteris Zvejnieks , Mihails Birjukovs , Martins Klevs , Megumi Akashi , Sven Eckert , Andris Jakovics
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