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TauREx 3 is the next generation of the TauREx exoplanet atmospheric retrieval framework for Windows, Mac, and Linux. It is a complete rewrite with a full Python stack that makes it easy-to-use, high-performance, dynamic, and flexible. The…

Instrumentation and Methods for Astrophysics · Physics 2021-08-19 Ahmed F. Al-Refaie , Quentin Changeat , Ingo P. Waldmann , Giovanna Tinetti

An algorithm named InterOpt for optimizing operational parameters is proposed based on interpretable machine learning, and is demonstrated via optimization of shale gas development. InterOpt consists of three parts: a neural network is used…

Machine Learning · Computer Science 2022-06-22 Yuntian Chen , Dongxiao Zhang , Qun Zhao , Dexun Liu

Food production is a complex process which can benefit from many optimisation approaches. However, there is growing interest in methods that support customisation of food properties to satisfy individual consumer preferences. This paper…

Neural and Evolutionary Computing · Computer Science 2022-04-14 Mohammad Majid al-Rifaie , Marc Cavazza

Computationally efficient and automated generation of convex hulls is desirable for high throughput materials discovery of thermodynamically stable multi-species crystal structures. A convex hull genetic algorithm is proposed that uses…

Materials Science · Physics 2024-04-23 Scott Donaldson , Robert A. Lawrence , Matt I. J. Probert

We introduce a computational method to discover polymorphs in molecular crystals at finite temperature. The method is based on reproducing the crystallization process starting from the liquid and letting the system discover the relevant…

Chemical Physics · Physics 2020-04-10 Pablo M. Piaggi , Michele Parrinello

Prediction of stable crystal structures at given pressure-temperature conditions, based only on the knowledge of the chemical composition, is a central problem of condensed matter physics. This extremely challenging problem is often termed…

Materials Science · Physics 2015-05-20 A. R. Oganov , Y. Ma , A. O. Lyakhov , M. Valle , C. Gatti

While crystal structure prediction (CSP) remains a longstanding challenge, we introduce ParetoCSP, a novel algorithm for CSP, which combines a multi-objective genetic algorithm (MOGA) with a neural network inter-atomic potential (IAP) model…

Materials Science · Physics 2023-09-14 Sadman Sadeed Omee , Lai Wei , Jianjun Hu

Optimization problems seek to find the best solution to an objective under a set of constraints, and have been widely investigated in real-world applications. Modeling and solving optimization problems in a specific domain typically require…

Optimization and Control · Mathematics 2024-07-12 Jihai Zhang , Wei Wang , Siyan Guo , Li Wang , Fangquan Lin , Cheng Yang , Wotao Yin

With advancements in computational molecular modeling and powerful structure search methods, it is now possible to systematically screen crystal structures for small organic molecules. In this context, we introduce the Python package…

Materials Science · Physics 2025-06-06 Qiang Zhu , Shinnosuke Hattori

A novel Genetic Algorithm is described that is suitable for determining the global minimum energy configurations of crystal structures and which can also be used as a polymorph search technique. This algorithm requires no prior assumptions…

Other Condensed Matter · Physics 2007-05-23 N. L. Abraham , M. I. J. Probert

The method and the advantages of an evolutionary computing based approach using a steady state genetic algorithm (GA) for the parameterization of interatomic potentials for metal oxides within the shell model framework are developed and…

Materials Science · Physics 2013-06-06 Jose Solomon , Peter Chung , Deepak Srivastava , Eric Darve

The advent of advanced crystallographic techniques has shifted structural biology from static, single-conformer models toward probing protein dynamics. Extracting cooperative motions from temporally and spatially averaged electron density…

Quantitative Methods · Quantitative Biology 2025-09-08 Avinash Mandaiya , Veit Elser

We have developed an efficient and reliable methodology for crystal structure prediction, merging ab initio total-energy calculations and a specifically devised evolutionary algorithm. This method allows one to predict the most stable…

Materials Science · Physics 2009-11-18 A. R. Oganov , C. W. Glass

Crystal structure prediction is a fundamental problem in materials science. We present CrystalFormer-CSP, an efficient framework that unifies data-driven heuristic and physics-driven optimization approaches to predict stable crystal…

Materials Science · Physics 2025-12-23 Zhendong Cao , Shigang Ou , Lei Wang

Modelling and understanding properties of materials from first principles require knowledge of the underlying atomistic structure. This entails knowing the individual identity and position of all involved atoms. Obtaining such information…

Chemical Physics · Physics 2023-07-06 Mads-Peter Verner Christiansen , Nikolaj Rønne , Bjørk Hammer

We present a deep-learning framework, CrysXPP, to allow rapid prediction of electronic, magnetic and elastic properties of a wide range of materials with reasonable precision. Although our work is consistent with several recent attempts to…

The generation of plausible crystal structures is often the first step in predicting the structure and properties of a material from its chemical composition. Quickly generating and predicting inorganic crystal structures is important for…

Materials Science · Physics 2024-02-13 Luis M. Antunes , Keith T. Butler , Ricardo Grau-Crespo

In this paper, two multi-objective optimization frameworks in two variants (i.e., NSGA-III-ARM-V1, NSGA-III-ARM-V2; and MOEAD-ARM-V1, MOEAD-ARM-V2) are proposed to find association rules from transactional datasets. The first framework uses…

Neural and Evolutionary Computing · Computer Science 2020-03-23 Shaik Tanveer Ul Huq , Vadlamani Ravi

Constrained multi-objective optimization problems (CMOPs) are ubiquitous in real-world engineering optimization scenarios. A key issue in constrained multi-objective optimization is to strike a balance among convergence, diversity and…

Neural and Evolutionary Computing · Computer Science 2021-03-12 Xinyu Shan , Ke Li

Machine learning interatomic potentials have revolutionized complex materials design by enabling rapid exploration of material configurational spaces via crystal structure prediction with ab initio accuracy. However, critical challenges…

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