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Evolutionary Game Theory (EGT) simulations are used to model populations undergoing biological and cultural evolution in a range of fields, from biology to economics to linguistics. In this paper we present DyPy, an open source Python…

Populations and Evolution · Quantitative Biology 2020-07-29 Anjalika Nande , Andrew Ferdowsian , Eric Lubin , Erez Yoeli , Martin Nowak

Ordinary Differential Equations (ODE) are used throughout science where the capture of rates of change in states is sought. While both pieces of commercial and open software exist to study such systems, their efficient and accurate usage…

Mathematical Software · Computer Science 2018-03-20 Edwin Tye , Tom Finnie , Ian Hall , Steve Leach

Dynamic programming (DP) is a fundamental and powerful algorithmic paradigm taught in most undergraduate (and many graduate) algorithms classes. DP problems are challenging for many computer science students because they require identifying…

Computers and Society · Computer Science 2024-11-13 David H. Lee , Aditya Prasad , Ramiro Deo-Campo Vuong , Tianyu Wang , Eric Han , David Kempe

Survival analysis is widely used as a technique to model time-to-event data when some data is censored, particularly in healthcare for predicting future patient risk. In such settings, survival models must be both accurate and interpretable…

Machine Learning · Computer Science 2024-04-24 Mike Van Ness , Madeleine Udell

Diffusion models have seen notable success in continuous domains, leading to the development of discrete diffusion models (DDMs) for discrete variables. Despite recent advances, DDMs face the challenge of slow sampling speeds. While…

Machine Learning · Computer Science 2024-10-11 Yong-Hyun Park , Chieh-Hsin Lai , Satoshi Hayakawa , Yuhta Takida , Yuki Mitsufuji

To get a good understanding of a dynamical system, it is convenient to have an interpretable and versatile model of it. Timed discrete event systems are a kind of model that respond to these requirements. However, such models can be…

Artificial Intelligence · Computer Science 2023-06-21 Lénaïg Cornanguer , Christine Largouët , Laurence Rozé , Alexandre Termier

The availability of open-source molecular simulation software packages allows scientists and engineers to focus on running and analyzing simulations without having to write, parallelize, and validate their own simulation software. While…

Computational Physics · Physics 2025-10-03 Simon Gravelle , Cecilia M. S. Alvares , Jacob R. Gissinger , Axel Kohlmeyer

We present an algorithm for synthesising a controller (supervisor) for a discrete event system (DES) based on the property-directed reachability (PDR) model checking algorithm. The discrete event systems framework is useful in both…

Systems and Control · Computer Science 2017-11-20 Koen Claessen , Jonatan Kilhamn , Laura Kovács , Bengt Lennartson

System dynamics (SD) is an effective approach for helping reveal the temporal behavior of complex systems. Although there have been recent developments in expanding SD to include systems' spatial dependencies, most applications have been…

Computational Engineering, Finance, and Science · Computer Science 2015-06-03 Christian Neuwirth , Angela Peck , Slobodan Simonovic

This paper presents a new C++ framework, DELPHES, performing a fast multipurpose detector response simulation. The simulation includes a tracking system, embedded into a magnetic field, calorimeters and a muon system, and possible very…

High Energy Physics - Phenomenology · Physics 2010-04-12 S. Ovyn , X. Rouby , V. Lemaitre

Animal cells are both encapsulated and subdivided by lipid bilayer membranes. Beyond just acting as boundaries, these membranes' shapes influence the function of cells and their compartments. Physically, membranes are two-dimensional fluids…

Soft Condensed Matter · Physics 2023-03-23 George Dadunashvili , Timon Idema

In current electronic structure research endeavors such as warm dense matter or machine learning applications, efficient development necessitates non-monolithic software, providing an extendable and flexible interface. The open-source idea…

Computational Physics · Physics 2025-01-17 Wanja Timm Schulze , Sebastian Schwalbe , Kai Trepte , Stefanie Gräfe

In recent years, there has been a growing interest in realizing methodologies to integrate more and more computation at the level of the image sensor. The rising trend has seen an increased research interest in developing novel event…

Image and Video Processing · Electrical Eng. & Systems 2021-05-05 Md Jubaer Hossain Pantho , Joel Mandebi Mbongue , Pankaj Bhowmik , Christophe Bobda

In this paper we study a cybersecurity problem of protecting system's secrets with multiple protections and a required security level, while minimizing the associated cost due to implementation/maintenance of these protections as well as…

Systems and Control · Electrical Eng. & Systems 2021-02-17 Shoma Matsui , Kai Cai

Co-simulation is commonly used for the analysis of complex cyber-physical energy systems (CPES). Different domain-specific simulation tools and modeling approaches are used to simulate all or parts of the system. The co-simulation framework…

Computational Engineering, Finance, and Science · Computer Science 2024-10-23 Annika Ofenloch , Jan Sören Schwarz , Deborah Tolk , Tobias Brandt , Reef Eilers , Rebeca Ramirez

Pyrit is a field simulation software based on the finite element method written in Python to solve coupled systems of partial differential equations. It is designed as a modular software that is easily modifiable and extendable. The…

Computational Engineering, Finance, and Science · Computer Science 2023-10-02 Jonas Bundschuh , M. Greta Ruppert , Yvonne Späck-Leigsnering

Digital processing-in-memory (PIM) architectures mitigate the memory wall problem by facilitating parallel bitwise operations directly within the memory. Recent works have demonstrated their algorithmic potential for accelerating…

Hardware Architecture · Computer Science 2024-10-01 Orian Leitersdorf , Ronny Ronen , Shahar Kvatinsky

This is a method for discrete event simulation specified by survival analysis. It presents a sequence of steps. First, hazard rates from survival analysis specify the rates of a set of counting processes. Second, those counting processes…

Computation · Statistics 2016-10-14 Andrew J. Dolgert

Many human interactions, such as political debates, are carried out in group settings, where there are arbitrarily many participants, each with different views and agendas. To explore such complex social settings, we present SAUCE: a…

Computation and Language · Computer Science 2024-11-07 Shlomo Neuberger , Niv Eckhaus , Uri Berger , Amir Taubenfeld , Gabriel Stanovsky , Ariel Goldstein

PySCF is a general-purpose electronic structure platform designed from the ground up to emphasize code simplicity, both to aid new method development, as well as for flexibility in computational workflow. The package provides a wide range…