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Background. In modern software development, the use of external libraries and packages is increasingly prevalent, streamlining the software development process and enabling developers to deploy feature-rich systems with little coding. While…

Software Engineering · Computer Science 2024-12-09 Haya Samaana , Diego Elias Costa , Emad Shihab , Ahmad Abdellatif

A risk in adopting third-party dependencies into an application is their potential to serve as a doorway for malicious code to be injected (most often unknowingly). While many initiatives from both industry and research communities focus on…

Software Engineering · Computer Science 2023-09-11 Supatsara Wattanakriengkrai , Raula Gaikovina Kula , Christoph Treude , Kenichi Matsumoto

Large language models (LLMs) are increasingly embedded in open-source software (OSS) ecosystems, creating complex interactions among natural language prompts, probabilistic model outputs, and execution-capable components. However, it…

Cryptography and Security · Computer Science 2026-04-16 Fariha Tanjim Shifat , Hariswar Baburaj , Ce Zhou , Jaydeb Sarker , Mia Mohammad Imran

GitHub plays a critical role in modern software supply chains, making its security an important research concern. Existing studies have primarily focused on CI/CD automation, collaboration patterns, and community management, while abuse…

Software Engineering · Computer Science 2026-04-21 Yuli Cheng , Xiaoyu Zhang , Jiongchi Yu , Shiqing Ma , Chao Shen , Yang Liu

Developers use and contribute to repositories on GitHub. Documentation present in the repositories serves as an important source by helping developers to understand, maintain and contribute to the project. Currently, documentation in a…

Software Engineering · Computer Science 2021-03-02 Akhila Sri Manasa Venigalla , Sridhar Chimalakonda

Open source software (OSS) vulnerabilities threaten the security of software systems that use OSS. Vulnerability databases provide valuable information (e.g., vulnerable version and patch) to mitigate OSS vulnerabilities. There arises a…

Software Engineering · Computer Science 2023-10-03 Congying Xu , Bihuan Chen , Chenhao Lu , Kaifeng Huang , Xin Peng , Yang Liu

GitHub is a popular data repository for code examples. It is being continuously used to train several AI-based tools to automatically generate code. However, the effectiveness of such tools in correctly demonstrating the usage of…

Cryptography and Security · Computer Science 2022-11-28 Catherine Tony , Nicolás E. Díaz Ferreyra , Riccardo Scandariato

Background: Open source software ecosystems exhibit dense dependency networks in which maintenance degradation of structurally central packages can propagate widely. Despite increasing attention to open source sustainability, existing…

Software Engineering · Computer Science 2026-05-11 Alexandros Tsakpinis , Emil Schwenger , Alexander Pretschner

The number of open source software projects has been growing exponentially. The major online software repository host, GitHub, has accumulated tens of millions of publicly available Git version-controlled repositories. Although the research…

Software Engineering · Computer Science 2018-03-28 Vadim Markovtsev , Waren Long

Due to the increasing number of attacks targeting open source library ecosystems, assisting maintainers has become a top priority. This is especially important since maintainers are usually overworked. Although the motivation of Open Source…

Software Engineering · Computer Science 2023-04-13 Supatsara Wattanakriengkrai , Raula Gaikovina Kula , Christoph Treude , Kenichi Matsumoto

GitHub hosts millions of software repositories, facilitating developers to contribute to many projects in multiple ways. Most of the information about the repositories is text-based in the form of stars, forks, commits, and so on. However,…

Software Engineering · Computer Science 2022-05-03 Akhila Sri Manasa Venigalla , Kowndinya Boyalakunta , Sridhar Chimalakonda

Contemporary software is characterized by reuse of components that are declared as dependencies and that are received from package managers/registries, such as, NPM, PyPI, RubyGems, Maven Central, etc. Direct and indirect dependency…

Software Engineering · Computer Science 2022-03-04 Rolf-Helge Pfeiffer

Open-source software (OSS) supply chain security has become a topic of concern for organizations. Patching an OSS vulnerability can require updating other dependent software products in addition to the original package. However, the…

Software Engineering · Computer Science 2024-04-19 Cadence Patrick , Kimberly Ruth , Zakir Durumeric

Security vulnerability in third-party dependencies is a growing concern not only for developers of the affected software, but for the risks it poses to an entire software ecosystem, e.g., Heartbleed vulnerability. Recent studies show that…

Software Engineering · Computer Science 2021-06-24 Bodin Chinthanet , Raula Gaikovina Kula , Shane McIntosh , Takashi Ishio , Akinori Ihara , Kenichi Matsumoto

Security vulnerabilities introduced by applications using third-party dependencies are on the increase, caused by the emergence of large ecosystems of libraries such as the NPM packages for JavaScript. Nowadays, libraries depend on each…

The definition of scholarly content has expanded to include the data and source code that contribute to a publication. While major archiving efforts to preserve conventional scholarly content, typically in PDFs (e.g., LOCKSS, CLOCKSS,…

Digital Libraries · Computer Science 2022-08-10 Emily Escamilla , Martin Klein , Talya Cooper , Vicky Rampin , Michele C. Weigle , Michael L. Nelson

Software libraries are central to the functionality, security, and maintainability of modern code. As developers increasingly turn to Large Language Models (LLMs) to assist with programming tasks, understanding how these models recommend…

Software Engineering · Computer Science 2025-08-08 Jasmine Latendresse , SayedHassan Khatoonabadi , Emad Shihab

In the evolving landscape of clinical informatics, the integration and utilization of software tools developed through governmental funding represent a pivotal advancement in research and application. However, the dispersion of these tools…

Digital Libraries · Computer Science 2024-03-28 Jeremy R. Harper

The NPM package repository contains over two million packages and serves tens of billions of downloads per-week. Nearly every single JavaScript application uses the NPM package manager to install packages from the NPM repository. NPM relies…

Software Engineering · Computer Science 2023-04-04 Donald Pinckney , Federico Cassano , Arjun Guha , Jonathan Bell

A package's source code repository records the development history of the package, providing indispensable information for the use and risk monitoring of the package. However, a package release often misses its source code repository due to…

Software Engineering · Computer Science 2024-04-26 Kai Gao , Weiwei Xu , Wenhao Yang , Minghui Zhou
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