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In this paper, we define a class of auxiliary graphs associated with simple undirected graphs. This class of auxiliary graphs is based on the set of spanning trees of the original graph and the edges constituting those spanning trees. A…
Motivated by alignment of correlated sparse random graphs, we introduce a hypothesis testing problem of deciding whether or not two random trees are correlated. We obtain sufficient conditions under which this testing is impossible or…
Phylogenetic trees and networks are leaf-labelled graphs used to model evolution. Display graphs are created by identifying common leaf labels in two or more phylogenetic trees or networks. The treewidth of such graphs is bounded as a…
The comprehensive characterization of the structure of complex networks is essential to understand the dynamical processes which guide their evolution. The discovery of the scale-free distribution and the small world property of real…
We study \emph{local computation algorithms (LCAs)} for constructing spanning trees. In this setting, the goal is to locally determine, for each edge $ e \in E $, whether it belongs to a spanning tree $ T $ of the input graph $ G $, where $…
The strong thin tree conjecture states that every $k$-edge-connected graph $G$ contains an $O(1/k)$-thin spanning tree, meaning a spanning tree which contains at most an $O(1/k)$ fraction of the edges across each cut in $G$. This conjecture…
For a graph $G$, let $\tau(G)$ denote the number of spanning trees. We show that for every fixed $0 < c < 1/4$, the number of distinct values of $\tau(G)$, as $G$ ranges over simple graphs on $n$ vertices, is at least $\exp(c n \log n)$ for…
Highly connected and yet sparse graphs (such as expanders or graphs of high treewidth) are fundamental, widely applicable and extensively studied combinatorial objects. We initiate the study of such highly connected graphs that are, in…
A rainbow spanning tree in an edge-colored graph is a spanning tree in which each edge is a different color. Carraher, Hartke, and Horn showed that for $n$ and $C$ large enough, if $G$ is an edge-colored copy of $K_n$ in which each color…
A spanning tree of a graph is a connected subgraph on all vertices with the minimum number of edges. The number of spanning trees in a graph $G$ is given by Matrix Tree Theorem in terms of principal minors of Laplacian matrix of $G$. We…
Most phylogenetic analyses result in a sample of trees, but summarizing and visualizing these samples can be challenging. Consensus trees often provide limited information about a sample, and so methods such as consensus networks,…
In recent years, tree tensor network methods have proven capable of simulating quantum many-body and other high-dimensional systems. This work is a user guide to our Python library PyTreeNet. It includes code examples and exercises to…
Degree distribution, or equivalently called degree sequence, has been commonly used to be one of most significant measures for studying a large number of complex networks with which some well-known results have been obtained. By contrast,…
We consider graph property testing in $p$-degenerate graphs under the random neighbor oracle model (Czumaj and Sohler, FOCS 2019). In this framework, a tester explores a graph by sampling uniform neighbors of vertices, and a property is…
Searching dependency graphs and manipulating them can be a time consuming and challenging task to get right. We document Semgrex, a system for searching dependency graphs, and introduce Ssurgeon, a system for manipulating the output of…
We study the minimal spanning arborescence which is the directed analogue of the minimal spanning tree, with a particular focus on its infinite volume limit and its geometric properties. We prove that in a certain large class of transient…
We introduce propagation kernels, a general graph-kernel framework for efficiently measuring the similarity of structured data. Propagation kernels are based on monitoring how information spreads through a set of given graphs. They leverage…
Recently, so-called treebased phylogenetic networks have gained considerable interest in the literature, where a treebased network is a network that can be constructed from a phylogenetic tree, called the base tree, by adding additional…
We call a tree $T$ is \emph{even} if every pair of its leaves is joined by a path of even length. Jackson and Yoshimoto~[J. Graph Theory, 2024] conjectured that every $r$-regular nonbipartite connected graph $G$ has a spanning even tree.…
In this work, we study the color discrepancy of spanning trees in random graphs. We show that for the Erd\H{o}s-R\'enyi random graph $G(n,p)$ with $p$ above the connectivity threshold, the following holds with high probability: in every…