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Graph representation learning, involving both node features and graph structures, is crucial for real-world applications but often encounters pervasive noise. State-of-the-art methods typically address noise by focusing separately on node…

Machine Learning · Computer Science 2024-10-17 Guangxin Su , Yifan Zhu , Wenjie Zhang , Hanchen Wang , Ying Zhang

Recent prevailing works on graph machine learning typically follow a similar methodology that involves designing advanced variants of graph neural networks (GNNs) to maintain the superior performance of GNNs on different graphs. In this…

Machine Learning · Computer Science 2024-06-07 Yiran Qiao , Xiang Ao , Yang Liu , Jiarong Xu , Xiaoqian Sun , Qing He

With the increasing prevalence of cross-domain Text-Attributed Graph (TAG) Data (e.g., citation networks, recommendation systems, social networks, and ai4science), the integration of Graph Neural Networks (GNNs) and Large Language Models…

Machine Learning · Computer Science 2024-12-18 Xunkai Li , Zhengyu Wu , Jiayi Wu , Hanwen Cui , Jishuo Jia , Rong-Hua Li , Guoren Wang

Virtual screening plays a critical role in modern drug discovery by enabling the identification of promising candidate molecules for experimental validation. Traditional machine learning methods such, as Support Vector Machines (SVM) and…

Machine Learning · Computer Science 2025-04-29 Radia Berreziga , Mohammed Brahimi , Khairedine Kraim , Hamid Azzoune

In the field of chemistry, the objective is to create novel molecules with desired properties, facilitating accurate property predictions for applications such as material design and drug screening. However, existing graph deep learning…

Machine Learning · Computer Science 2024-08-28 Sakhinana Sagar Srinivas , Venkataramana Runkana

Integrating Pre-trained Language Models (PLMs) with Graph Neural Networks (GNNs) remains a central challenge in text-rich heterophilic graph learning. We propose a novel integration framework that enables effective fusion between powerful…

Computation and Language · Computer Science 2025-10-09 Aarush Sinha

Prior studies have demonstrated the effectiveness of Deep Learning (DL) in automated software vulnerability detection. Graph Neural Networks (GNNs) have proven effective in learning the graph representations of source code and are commonly…

Software Engineering · Computer Science 2023-02-10 Xin-Cheng Wen , Yupan Chen , Cuiyun Gao , Hongyu Zhang , Jie M. Zhang , Qing Liao

The natural combination of intricate topological structures and rich textual information in text-attributed graphs (TAGs) opens up a novel perspective for graph anomaly detection (GAD). However, existing GAD methods primarily focus on…

Machine Learning · Computer Science 2025-08-04 Yiming Xu , Jiarun Chen , Zhen Peng , Zihan Chen , Qika Lin , Lan Ma , Bin Shi , Bo Dong

Large Language Models (LLMs) are increasingly integrated with graph-structured data for tasks like node classification, a domain traditionally dominated by Graph Neural Networks (GNNs). While this integration leverages rich relational…

Cryptography and Security · Computer Science 2025-08-08 Iyiola E. Olatunji , Franziska Boenisch , Jing Xu , Adam Dziedzic

The last few years have seen an increasing wave of attacks with serious economic and privacy damages, which evinces the need for accurate Network Intrusion Detection Systems (NIDS). Recent works propose the use of Machine Learning (ML)…

Cryptography and Security · Computer Science 2021-08-02 David Pujol-Perich , José Suárez-Varela , Albert Cabellos-Aparicio , Pere Barlet-Ros

Graph Neural Networks (GNNs) are widely adopted in Web-related applications, serving as a core technique for learning from graph-structured data, such as text-attributed graphs. Yet in real-world scenarios, such graphs exhibit deficiencies…

Machine Learning · Computer Science 2025-10-03 Zhaoyan Wang , Zheng Gao , Arogya Kharel , In-Young Ko

Automated detection of vulnerabilities in source code is an essential cybersecurity challenge, underpinning trust in digital systems and services. Graph Neural Networks (GNNs) have emerged as a promising approach as they can learn…

Artificial Intelligence · Computer Science 2025-09-10 David Egea , Barproda Halder , Sanghamitra Dutta

Time, cost, and energy efficiency are critical considerations in Deep-Learning (DL), particularly when processing long texts. Transformers, which represent the current state of the art, exhibit quadratic computational complexity relative to…

Computation and Language · Computer Science 2025-07-11 Fardin Rastakhiz

Graph neural networks (GNNs) have revolutionized the field of machine learning on non-Euclidean data such as graphs and networks. GNNs effectively implement node representation learning through neighborhood aggregation and achieve…

Machine Learning · Computer Science 2024-04-30 Zehao Dong , Muhan Zhang , Yixin Chen

Inspired by the notion that ``{\it to copy is easier than to memorize}``, in this work, we introduce GNN-LM, which extends the vanilla neural language model (LM) by allowing to reference similar contexts in the entire training corpus. We…

Computation and Language · Computer Science 2022-05-05 Yuxian Meng , Shi Zong , Xiaoya Li , Xiaofei Sun , Tianwei Zhang , Fei Wu , Jiwei Li

Textual Attributed Graphs (TAGs) are crucial for modeling complex real-world systems, yet leveraging large language models (LLMs) for TAGs presents unique challenges due to the gap between sequential text processing and graph-structured…

Machine Learning · Computer Science 2025-05-09 Zhengyu Hu , Yichuan Li , Zhengyu Chen , Jingang Wang , Han Liu , Kyumin Lee , Kaize Ding

Graph Neural Networks (GNNs) have emerged as powerful representation learning tools for capturing complex dependencies within diverse graph-structured data. Despite their success in a wide range of graph mining tasks, GNNs have raised…

Machine Learning · Computer Science 2024-06-19 Wenzhao Jiang , Hao Liu , Hui Xiong

Graph Neural Networks (GNNs) have become a pivotal framework for modeling graph-structured data, enabling a wide range of applications from social network analysis to molecular chemistry. By integrating large language models (LLMs),…

Machine Learning · Computer Science 2025-10-15 Bowen Fan , Zhilin Guo , Xunkai Li , Yihan Zhou , Bing Zhou , Zhenjun Li , Rong-Hua Li , Guoren Wang

Large language models (LLMs) have shown remarkable generalization capability with exceptional performance in various language modeling tasks. However, they still exhibit inherent limitations in precisely capturing and returning grounded…

Computation and Language · Computer Science 2024-01-01 Yijun Tian , Huan Song , Zichen Wang , Haozhu Wang , Ziqing Hu , Fang Wang , Nitesh V. Chawla , Panpan Xu

Graph Neural Networks (GNNs) have emerged as powerful tools for learning over structured data, including text-attributed graphs (TAGs), which are common in domains such as citation networks, social platforms, and knowledge graphs. GNNs are…

Machine Learning · Computer Science 2026-04-23 Peyman Baghershahi , Gregoire Fournier , Pranav Nyati , Sourav Medya