Related papers: A Variational Approach to Trap Macromolecules
The motion of a particle that suffers the influence of simple inner (outer) periodic perturbations when it evolves around a center of attraction modeled by an inverse square law plus a quadrupole-like term is studied. The equations of…
We apply a variational Ansatz based on neural networks to the problem of spin-$1/2$ fermions in a harmonic trap interacting through a short distance potential. We showed that standard machine learning techniques lead to a quick convergence…
We present a kinetic model of crystal growth of polymers of finite molecular weight. Experiments help to classify polymer crystallization broadly into two kinetic regimes. One is observed in melts or in high molar mass polymer solutions and…
This article is concerned with a new filtered two-step variational integrator for solving the charged-particle dynamics in a mildly non-uniform moderate or strong magnetic field with a dimensionless parameter $\varepsilon$ inversely…
Growing and studying large Coulomb crystals, composed of tens to hundreds of thousands of ions, in linear quadrupole ion traps presents new challenges for trap implementation. We consider several trap designs, first comparing the total…
We present a systematic statistical mechanical analysis of the conformational properties of a stiff polyelectrolyte chain with intrachain attractions that are due to counterion correlations. We show that the mean-field solution corresponds…
Stretched polymers with attractive interaction are studied in two and three dimensions. They are described by biased self-avoiding random walks with nearest neighbour attraction. The bias corresponds to opposite forces applied to the first…
When studying the motion of optically trapped particles on the $\mu s$ time scale, in low viscous media such as air, inertia cannot be neglected. Resolution of unusual and interesting behaviour not seen in colloidal trapping experiments is…
Quadratic trapping potentials are widely used to experimentally probe biopolymers and molecular machines and drive transitions in steered molecular-dynamics simulations. Approximating energy landscapes as locally quadratic, we design…
Planar rotors can be realized by confining molecular ions or charged nanoparticles together with atomic ions in a Paul trap. We study the case of molecular ions or charged nanoparticles that have an electric dipole moment which couples to…
We provide a detailed study of the interplay between the different interactions which appear in the Brownian motion of a micronsized sphere immersed in a viscoelastic fluid measured with optical trapping interferometry. To explore a wide…
We develop a computational method for evaluating the damping of vibrational modes in mono-atomic metallic chains suspended between bulk crystals under external strain. The damping is due to the coupling between the chain and contact modes…
We study the elastic properties of a single A/B copolymer chain with a specific sequence. We predict a rich structure in the force extension relations which can be addressed to the sequence. The variational method is introduced to probe…
The conformations of interacting linear polymers on a dynamical planar random lattice are studied using a random two-matrix model. An exact expression for the partition function of self-avoiding chains subject to attractive contact…
We consider two separated pancake-shaped trapped gases interacting with a dipolar (either magnetic or electric) force. We study how the center of mass motion propagates from one cloud to the other as a consequence of the long-range nature…
We investigate the crystallization of a single, flexible homopolymer chain using transition path sampling (TPS). The chain consists of N identical spherical monomers evolved according to Langevin dynamics. While neighboring monomers are…
The flow and deformation of macromolecules is ubiquitous in nature and industry, and an understanding of this phenomenon at both macroscopic and microscopic length scales is of fundamental and practical importance. Here we present the…
We survey the few exact results on the Stormer problem describing the dynamics of charged particles in the Earth magnetosphere. The analysis of this system leads to the the conclusion that charged particles are trapped in the Earth…
High-index dielectrics can confine light into nano-scale leading to enhanced nonlinear response. However, increased momentum in these media can deteriorate the overlap between different harmonics which hinders efficient nonlinear…
We apply nonperturbative variational techniques to a relativistic scalar field theory in which heavy bosons (``nucleons'') interact with light scalar mesons via a Yukawa coupling. Integrating out the meson field and neglecting the nucleon…